SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10083198	0.82[EUR][1000 genomes]
rs10747525	0.86[ASN][1000 genomes]
rs10875695	0.90[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10875697	0.97[ASN][1000 genomes]
rs10875700	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10875701	0.96[ASN][1000 genomes]
rs10875702	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10875704	0.82[CHD][hapmap]
rs11168309	0.83[ASN][1000 genomes]
rs11568820	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs11574026	0.82[ASW][hapmap]
rs11829292	0.96[ASN][1000 genomes]
rs12304114	0.91[ASN][1000 genomes]
rs4237855	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4254129	0.96[ASN][1000 genomes]
rs4334089	0.90[CEU][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs4341603	0.86[EUR][1000 genomes]
rs4402365	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4442605	0.96[ASN][1000 genomes]
rs4454781	0.96[ASN][1000 genomes]
rs7299460	0.82[EUR][1000 genomes]
rs7302235	0.94[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7305180	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs7308216	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation
TMEM106C	Distal transcriptional regulation
VDR	RNA binding protein mediated regulation
ENSG00000205537	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)