SNP Report
Basic Infomation
| Name | rs12304114 dbSNP |
|---|---|
| Location | chr:12,48307888 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747525 | 0.84[ASN][1000 genomes] |
| rs10875697 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10875700 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10875701 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875702 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11168298 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11168309 | 0.82[ASN][1000 genomes] |
| rs11829292 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12231051 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12231071 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12304110 | 0.85[EUR][1000 genomes] |
| rs4254129 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4402365 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4442605 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4454781 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7136534 | 0.91[ASN][1000 genomes] |
| rs7305180 | 0.93[ASN][1000 genomes] |
| rs7308216 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014