SNP Report
Basic Infomation
| Name | rs7965397 dbSNP |
|---|---|
| Location | chr:12,48289220 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747525 | 0.85[ASN][1000 genomes] |
| rs10783219 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10875695 | 0.90[ASN][1000 genomes] |
| rs10875699 | 0.85[AMR][1000 genomes] |
| rs11568820 | 0.92[ASN][1000 genomes] |
| rs4237855 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4334089 | 0.88[ASN][1000 genomes] |
| rs4578458 | 0.86[AMR][1000 genomes] |
| rs4760603 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4760655 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4760669 | 0.85[AMR][1000 genomes] |
| rs6580644 | 0.83[AMR][1000 genomes] |
| rs7132324 | 0.85[AMR][1000 genomes] |
| rs7302235 | 0.90[ASN][1000 genomes] |
| rs7312286 | 0.85[AMR][1000 genomes] |
| rs7976091 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | RNA binding protein mediated regulation |
| ENSG00000205537 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014