SNP Report

Basic Infomation

Name	rs4411326 dbSNP
Location	chr:12,48331420
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747527	0.83[JPT][hapmap]
rs10783221	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10875697	0.84[EUR][1000 genomes]
rs10875700	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs10875701	0.84[EUR][1000 genomes]
rs10875702	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10875704	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875705	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875706	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875707	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875708	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875709	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168309	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168311	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168313	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168314	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168315	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168316	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168318	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168319	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11168320	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11568820	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs11829292	0.84[EUR][1000 genomes]
rs12306963	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12831006	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34381446	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4254129	0.84[EUR][1000 genomes]
rs4402365	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs4442605	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs4454781	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs61920869	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61920870	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7303966	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs7308216	0.91[EUR][1000 genomes]
rs7975675	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7976091	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
HDAC7	Distal transcriptional regulation
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)