SNP Report
Basic Infomation
| Name | rs7972902 dbSNP |
|---|---|
| Location | chr:12,12655443 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10743988 | 0.94[ASN][1000 genomes] |
| rs10772570 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10845552 | 0.91[CHB][hapmap] |
| rs10845559 | 0.83[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.93[ASN][1000 genomes] |
| rs10845560 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.95[ASN][1000 genomes] |
| rs10845563 | 0.81[GIH][hapmap] |
| rs10845567 | 1.00[CHB][hapmap];0.94[ASN][1000 genomes] |
| rs10845568 | 0.92[CEU][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs10845572 | 0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11054937 | 0.95[ASN][1000 genomes] |
| rs11054940 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11054941 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.95[ASN][1000 genomes] |
| rs11054942 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11054947 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11610879 | 0.85[EUR][1000 genomes] |
| rs11613385 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12422540 | 0.95[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs1558822 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2041927 | 0.96[CEU][hapmap] |
| rs2111271 | 0.95[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs2417190 | 0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3815591 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4255620 | 0.95[ASN][1000 genomes] |
| rs4763832 | 0.89[ASN][1000 genomes] |
| rs4763833 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7137455 | 0.94[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7294378 | 0.86[ASN][1000 genomes] |
| rs7295305 | 0.84[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs7295427 | 0.91[ASN][1000 genomes] |
| rs7308097 | 0.91[LWK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs7310652 | 0.95[ASN][1000 genomes] |
| rs933575 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[ASN][1000 genomes] |
| rs962928 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014