SNP Report
Basic Infomation
| Name | rs4763833 dbSNP |
|---|---|
| Location | chr:12,12639809 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10743988 | 0.88[ASN][1000 genomes] |
| rs10772570 | 0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10845552 | 0.91[CHB][hapmap];0.91[MEX][hapmap] |
| rs10845559 | 0.83[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.91[ASN][1000 genomes] |
| rs10845560 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs10845567 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs10845568 | 0.85[CEU][hapmap] |
| rs10845572 | 0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11054937 | 0.89[ASN][1000 genomes] |
| rs11054940 | 0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11054941 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs11054942 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11054947 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11613385 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12422540 | 0.95[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs1558822 | 0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2041927 | 0.88[CEU][hapmap] |
| rs2111271 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2417190 | 0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3815591 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4255620 | 0.89[ASN][1000 genomes] |
| rs4763832 | 0.87[ASN][1000 genomes] |
| rs7137455 | 0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7294378 | 0.89[ASN][1000 genomes] |
| rs7295305 | 0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7295427 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7308097 | 0.94[LWK][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7310652 | 0.89[ASN][1000 genomes] |
| rs7972902 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs933575 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.91[ASN][1000 genomes] |
| rs962928 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | Distal transcriptional regulation |
| ENSG00000255670 | RNA binding protein mediated regulation |
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014