SNP Report
Name | rs933575   dbSNP |
---|---|
Location | chr:12,12636234 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10743988 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10772570 | 0.81[ASN][1000 genomes] |
rs10845552 | 0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10845556 | 0.84[EUR][1000 genomes] |
rs10845559 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10845560 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10845563 | 0.89[GIH][hapmap];0.80[MEX][hapmap] |
rs10845567 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10845572 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes] |
rs11054937 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11054940 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes] |
rs11054941 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11054942 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes] |
rs11054947 | 0.91[ASN][1000 genomes] |
rs11613385 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes] |
rs12422540 | 0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1558822 | 0.93[ASN][1000 genomes] |
rs2111271 | 0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2287206 | 1.00[ASW][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs2417190 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes] |
rs3815591 | 0.88[ASN][1000 genomes] |
rs4255620 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4763832 | 0.85[ASN][1000 genomes] |
rs4763833 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.91[ASN][1000 genomes] |
rs7137455 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7294378 | 0.92[ASN][1000 genomes] |
rs7295305 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes] |
rs7295427 | 0.88[ASN][1000 genomes] |
rs7310652 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7972902 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[ASN][1000 genomes] |
rs962927 | 0.88[CEU][hapmap];0.82[MKK][hapmap] |
rs962928 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000255670 | Proximal transcriptional regulation |
DUSP16 | Distal transcriptional regulation |
DUSP16 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014