SNP Report
Name | rs11613385   dbSNP |
---|---|
Location | chr:12,12663812 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10743988 | 0.91[ASN][1000 genomes] |
rs10772570 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10845552 | 0.91[CHB][hapmap] |
rs10845559 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10845560 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes] |
rs10845567 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes] |
rs10845568 | 0.85[CEU][hapmap];0.80[EUR][1000 genomes] |
rs10845572 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11054937 | 0.91[ASN][1000 genomes] |
rs11054940 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11054941 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes] |
rs11054942 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11054947 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11610879 | 0.80[EUR][1000 genomes] |
rs12422540 | 0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes] |
rs1558822 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2041927 | 0.93[CEU][hapmap] |
rs2111271 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2417190 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3815591 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4255620 | 0.91[ASN][1000 genomes] |
rs4763832 | 0.88[ASN][1000 genomes] |
rs4763833 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes] |
rs7137455 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7294378 | 0.84[ASN][1000 genomes] |
rs7295305 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes] |
rs7295427 | 0.90[ASN][1000 genomes] |
rs7308097 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
rs7310652 | 0.91[ASN][1000 genomes] |
rs7956984 | 0.81[CEU][hapmap] |
rs7972902 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs933575 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes] |
rs962928 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
DUSP16 | Proximal transcriptional regulation |
DUSP16 | Distal transcriptional regulation |
DUSP16 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014