SNP Report

Basic Infomation

Name	rs2111271 dbSNP
Location	chr:12,12625588
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10743988	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10845552	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10845559	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845560	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845567	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10845572	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs11054937	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11054940	0.95[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11054941	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11054942	0.90[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11054947	0.87[ASN][1000 genomes]
rs11613385	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs12422540	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1558822	0.88[ASN][1000 genomes]
rs2417189	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2417190	0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs3815591	0.84[ASN][1000 genomes]
rs4255620	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4763832	0.90[ASN][1000 genomes]
rs4763833	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7137455	0.90[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs7294378	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7295305	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs7295427	0.89[ASN][1000 genomes]
rs7310652	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs744170	0.84[AFR][1000 genomes]
rs7972902	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs933575	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs962928	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
DUSP16	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)