SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10743988	0.85[AMR][1000 genomes]
rs10845556	0.86[EUR][1000 genomes]
rs10845559	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes]
rs10845560	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]
rs10845563	0.80[MEX][hapmap]
rs10845567	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[AMR][1000 genomes]
rs10845572	0.91[CHB][hapmap]
rs11054937	0.85[AMR][1000 genomes]
rs11054940	0.91[CHB][hapmap]
rs11054941	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes]
rs11054942	0.86[CHB][hapmap];0.91[MEX][hapmap]
rs11613385	0.91[CHB][hapmap]
rs12422540	0.87[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes]
rs2111271	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2287206	0.80[MEX][hapmap]
rs2417190	0.86[CHB][hapmap]
rs4255620	0.82[AMR][1000 genomes]
rs4763833	0.91[CHB][hapmap];0.91[MEX][hapmap]
rs7137455	0.86[CHB][hapmap]
rs7294378	0.84[AMR][1000 genomes]
rs7295305	0.86[CHB][hapmap];0.87[MEX][hapmap]
rs7310652	0.85[AMR][1000 genomes]
rs7972902	0.91[CHB][hapmap]
rs933575	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs962927	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs962928	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DUSP16	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)