SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10743989	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10845552	0.80[MEX][hapmap]
rs10845553	0.82[EUR][1000 genomes]
rs10845554	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10845557	0.84[EUR][1000 genomes]
rs10845559	0.86[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10845560	0.86[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10845562	0.83[CEU][hapmap];0.82[TSI][hapmap]
rs10845563	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11054926	0.82[EUR][1000 genomes]
rs11054941	0.84[GIH][hapmap];0.80[MEX][hapmap]
rs12424448	0.83[CEU][hapmap]
rs12819116	0.83[CEU][hapmap];0.80[TSI][hapmap]
rs17312926	0.83[CEU][hapmap]
rs2417189	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2417191	0.83[CEU][hapmap];0.80[TSI][hapmap]
rs736107	0.83[CEU][hapmap]
rs744170	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747726	0.83[CEU][hapmap]
rs888197	0.83[CEU][hapmap]
rs933575	1.00[ASW][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs962927	0.80[MKK][hapmap]
rs962928	0.84[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000255670	Proximal transcriptional regulation
DUSP16	Distal transcriptional regulation
DUSP16	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 3)