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rVarBase
SNP Report
Basic Infomation
Name
rs2417189  
dbSNP
Location
chr:12,12626050
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10743989
0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845563
0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11054923
0.84[EUR][1000 genomes]
rs11054925
0.85[EUR][1000 genomes]
rs2111271
0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2287206
0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs744170
0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs888197
0.81[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
DUSP16
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)