SNP Report
Basic Infomation
| Name | rs11054923 dbSNP |
|---|---|
| Location | chr:12,12624832 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10845553 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10845554 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10845557 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10845562 | 0.88[AMR][1000 genomes] |
| rs10845569 | 0.81[AMR][1000 genomes] |
| rs11054925 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11054926 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12369319 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17312926 | 0.81[AMR][1000 genomes] |
| rs2417189 | 0.84[EUR][1000 genomes] |
| rs2417191 | 0.82[AMR][1000 genomes] |
| rs736107 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs744170 | 0.83[EUR][1000 genomes] |
| rs888197 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014