SNP Report
Basic Infomation
| Name | rs10743989 dbSNP |
|---|---|
| Location | chr:12,12657705 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10743988 | 0.82[AFR][1000 genomes] |
| rs10845562 | 0.83[EUR][1000 genomes] |
| rs10845563 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10845567 | 0.81[AMR][1000 genomes] |
| rs10845569 | 0.81[EUR][1000 genomes] |
| rs11054937 | 0.81[AFR][1000 genomes] |
| rs11054941 | 0.82[AFR][1000 genomes] |
| rs12424448 | 0.82[EUR][1000 genomes] |
| rs12819116 | 0.82[EUR][1000 genomes] |
| rs17312926 | 0.80[EUR][1000 genomes] |
| rs2287206 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2417189 | 0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2417191 | 0.81[EUR][1000 genomes] |
| rs4255620 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs744170 | 0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs747726 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014