SNP Report
Basic Infomation
| Name | rs10845563 dbSNP |
|---|---|
| Location | chr:12,12659894 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10743988 | 0.81[AFR][1000 genomes] |
| rs10743989 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10845552 | 0.80[MEX][hapmap] |
| rs10845554 | 0.84[CEU][hapmap] |
| rs10845559 | 0.81[CEU][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap] |
| rs10845560 | 0.81[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap] |
| rs10845562 | 0.92[CEU][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs10845567 | 0.80[AFR][1000 genomes] |
| rs10845569 | 0.80[EUR][1000 genomes] |
| rs11054937 | 0.81[AFR][1000 genomes] |
| rs11054940 | 0.81[GIH][hapmap] |
| rs11054941 | 0.81[CEU][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];0.81[AFR][1000 genomes] |
| rs11054942 | 0.81[GIH][hapmap] |
| rs12424448 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs12819116 | 0.92[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs17312926 | 0.92[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs17379216 | 0.84[CEU][hapmap];0.80[TSI][hapmap] |
| rs2287206 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2417189 | 0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2417191 | 0.92[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs4255620 | 0.98[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs744170 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs747726 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs7972902 | 0.81[GIH][hapmap] |
| rs933575 | 0.89[GIH][hapmap];0.80[MEX][hapmap] |
| rs962928 | 0.81[CEU][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | Proximal transcriptional regulation |
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014