SNP Report

Basic Infomation

Name	rs12422540 dbSNP
Location	chr:12,12645696
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10743988	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772570	0.82[ASN][1000 genomes]
rs10845552	0.87[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes]
rs10845559	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845567	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845572	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs11054937	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11054940	0.95[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs11054941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11054942	1.00[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs11054947	0.90[ASN][1000 genomes]
rs11613385	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1558822	0.93[ASN][1000 genomes]
rs2111271	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2417190	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs3815591	0.88[ASN][1000 genomes]
rs4255620	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4763832	0.84[ASN][1000 genomes]
rs4763833	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs7137455	1.00[CHB][hapmap];0.80[JPT][hapmap];0.92[ASN][1000 genomes]
rs7294378	0.91[ASN][1000 genomes]
rs7295305	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs7295427	0.86[ASN][1000 genomes]
rs7310652	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7972902	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs933575	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962927	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs962928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
DUSP16	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)