SNP Report
Basic Infomation
| Name | rs3815591 dbSNP |
|---|---|
| Location | chr:12,12673637 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10743988 | 0.88[ASN][1000 genomes] |
| rs10743990 | 0.83[EUR][1000 genomes] |
| rs10772570 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10772572 | 0.80[EUR][1000 genomes] |
| rs10845559 | 0.88[ASN][1000 genomes] |
| rs10845560 | 0.88[ASN][1000 genomes] |
| rs10845567 | 0.89[ASN][1000 genomes] |
| rs10845572 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11054937 | 0.88[ASN][1000 genomes] |
| rs11054940 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11054941 | 0.88[ASN][1000 genomes] |
| rs11054942 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11054947 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11613385 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12422540 | 0.88[ASN][1000 genomes] |
| rs1558822 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2041927 | 0.81[EUR][1000 genomes] |
| rs2111271 | 0.84[ASN][1000 genomes] |
| rs2417190 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4255620 | 0.88[ASN][1000 genomes] |
| rs4763832 | 0.84[ASN][1000 genomes] |
| rs4763833 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7137455 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7294378 | 0.81[ASN][1000 genomes] |
| rs7295305 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7295427 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7310652 | 0.88[ASN][1000 genomes] |
| rs7972902 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs933575 | 0.88[ASN][1000 genomes] |
| rs962928 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | Distal transcriptional regulation |
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014