SNP Report
Basic Infomation
| Name | rs2041927 dbSNP |
|---|---|
| Location | chr:12,12680134 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10743990 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10772570 | 0.96[CEU][hapmap] |
| rs10772572 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10845568 | 0.88[CEU][hapmap] |
| rs10845572 | 0.92[CEU][hapmap] |
| rs11054940 | 0.96[CEU][hapmap] |
| rs11054942 | 0.96[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs11054947 | 0.83[EUR][1000 genomes] |
| rs11613385 | 0.93[CEU][hapmap] |
| rs3815591 | 0.81[EUR][1000 genomes] |
| rs4579996 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4763833 | 0.88[CEU][hapmap] |
| rs7137455 | 0.92[CEU][hapmap] |
| rs7295305 | 0.88[CEU][hapmap] |
| rs7956984 | 0.85[CEU][hapmap];0.96[CHB][hapmap];0.82[JPT][hapmap] |
| rs7972902 | 0.96[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | Distal transcriptional regulation |
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014