SNP Report
Basic Infomation
| Name | rs7308097 dbSNP |
|---|---|
| Location | chr:12,12663270 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10845572 | 0.91[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs11054940 | 0.85[LWK][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap] |
| rs11054942 | 0.92[LWK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs11613385 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs1558822 | 0.86[AFR][1000 genomes] |
| rs2417190 | 0.93[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs4763833 | 0.94[LWK][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7137455 | 0.94[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs7295305 | 0.82[YRI][hapmap] |
| rs7309730 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7972902 | 0.91[LWK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP16 | Proximal transcriptional regulation |
| DUSP16 | Distal transcriptional regulation |
| DUSP16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014