SNP Report
Basic Infomation
| Name | rs6060979 dbSNP |
|---|---|
| Location | chr:20,30417522 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 95)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1009453 | 0.83[ASN][1000 genomes] |
| rs10211752 | 0.83[ASN][1000 genomes] |
| rs10439607 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs1075698 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs17253922 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes] |
| rs1887732 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1994249 | 0.80[EUR][1000 genomes] |
| rs1994250 | 0.95[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs1994251 | 0.95[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2149281 | 0.83[ASN][1000 genomes] |
| rs2376992 | 0.88[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2376996 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2376998 | 0.83[ASN][1000 genomes] |
| rs2377317 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs3181073 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs3203770 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4453755 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs4518038 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs57726761 | 0.80[EUR][1000 genomes] |
| rs59590235 | 1.00[ASN][1000 genomes] |
| rs6058421 | 0.94[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs6058448 | 0.94[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6058450 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6058460 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6058462 | 0.83[ASN][1000 genomes] |
| rs6058463 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs6058470 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6060403 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs6060446 | 0.83[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs6060627 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6060633 | 0.95[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs6060644 | 0.80[EUR][1000 genomes] |
| rs6060652 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6060679 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6060763 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6060768 | 0.83[ASN][1000 genomes] |
| rs6060775 | 0.83[ASN][1000 genomes] |
| rs6060793 | 0.94[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs6060812 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6060821 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6060832 | 0.80[EUR][1000 genomes] |
| rs6060843 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6060870 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6060912 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6060923 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6060924 | 0.83[ASN][1000 genomes] |
| rs6060937 | 0.83[EUR][1000 genomes] |
| rs6060945 | 0.83[ASN][1000 genomes] |
| rs6060948 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6060952 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes] |
| rs6060953 | 0.83[ASN][1000 genomes] |
| rs6060955 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes] |
| rs6060960 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs6060976 | 1.00[CHB][hapmap] |
| rs6060978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060983 | 0.83[ASN][1000 genomes] |
| rs6060986 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6060987 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6060992 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6087775 | 0.83[ASN][1000 genomes] |
| rs6087778 | 1.00[CEU][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs6087783 | 0.83[ASN][1000 genomes] |
| rs6087809 | 1.00[CHB][hapmap] |
| rs6088962 | 0.94[CEU][hapmap] |
| rs6088997 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6089054 | 0.83[ASN][1000 genomes] |
| rs6089055 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6089058 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6089067 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs6089070 | 1.00[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs6089071 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs6089093 | 0.95[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6089094 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6119651 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6119718 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs6119720 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs6119725 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs6119729 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6120970 | 1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs6121221 | 0.84[EUR][1000 genomes] |
| rs6121242 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6121245 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6121246 | 0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7263175 | 0.84[EUR][1000 genomes] |
| rs7266148 | 0.94[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs7272062 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs73241710 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7354225 | 0.95[CEU][hapmap] |
| rs73903635 | 1.00[ASN][1000 genomes] |
| rs73903636 | 1.00[ASN][1000 genomes] |
| rs73903639 | 1.00[ASN][1000 genomes] |
| rs73903654 | 1.00[ASN][1000 genomes] |
| rs73903655 | 1.00[ASN][1000 genomes] |
| rs8118150 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs8126355 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ID1 | Distal transcriptional regulation |
| PDRG1 | Distal transcriptional regulation |
| MYLK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014