SNP Report
Basic Infomation
| Name | rs1887732 dbSNP |
|---|---|
| Location | chr:20,30413469 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1075698 | 0.84[AFR][1000 genomes] |
| rs4518038 | 0.85[EUR][1000 genomes] |
| rs6058450 | 0.81[AFR][1000 genomes] |
| rs6058470 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6060978 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6060979 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6060987 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs6060992 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs6089071 | 0.83[AFR][1000 genomes] |
| rs6089093 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs6089094 | 0.82[AMR][1000 genomes] |
| rs6119720 | 0.81[AFR][1000 genomes] |
| rs6119725 | 0.84[AFR][1000 genomes] |
| rs6119729 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6121221 | 0.81[AFR][1000 genomes] |
| rs6121242 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6121245 | 0.82[AMR][1000 genomes] |
| rs6121246 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs73241710 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs8118150 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MYLK2 | Proximal transcriptional regulation |
| ENSG00000226239 | Distal transcriptional regulation |
| MYLK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014