SNP Report

Basic Infomation

Name	rs6060978 dbSNP
Location	chr:20,30416893
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 88)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009453	0.83[ASN][1000 genomes]
rs10211752	0.83[ASN][1000 genomes]
rs10439607	0.83[ASN][1000 genomes]
rs1075698	0.87[EUR][1000 genomes]
rs17253922	0.83[ASN][1000 genomes]
rs1887732	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1994249	0.80[EUR][1000 genomes]
rs1994250	0.80[EUR][1000 genomes]
rs1994251	0.80[EUR][1000 genomes]
rs2149281	0.83[ASN][1000 genomes]
rs2376992	0.80[EUR][1000 genomes]
rs2376996	0.82[EUR][1000 genomes]
rs2376998	0.83[ASN][1000 genomes]
rs2377317	0.83[ASN][1000 genomes]
rs3181073	0.80[EUR][1000 genomes]
rs3203770	0.87[EUR][1000 genomes]
rs4453755	0.83[ASN][1000 genomes]
rs4518038	0.95[EUR][1000 genomes]
rs57726761	0.80[EUR][1000 genomes]
rs59590235	1.00[ASN][1000 genomes]
rs6058421	0.80[EUR][1000 genomes]
rs6058448	0.84[EUR][1000 genomes]
rs6058450	0.84[EUR][1000 genomes]
rs6058460	0.84[EUR][1000 genomes]
rs6058462	0.83[ASN][1000 genomes]
rs6058463	0.86[EUR][1000 genomes]
rs6058470	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6060627	0.83[ASN][1000 genomes]
rs6060633	0.80[EUR][1000 genomes]
rs6060644	0.80[EUR][1000 genomes]
rs6060652	0.83[ASN][1000 genomes]
rs6060679	0.80[EUR][1000 genomes]
rs6060763	0.81[EUR][1000 genomes]
rs6060768	0.83[ASN][1000 genomes]
rs6060775	0.83[ASN][1000 genomes]
rs6060793	0.80[EUR][1000 genomes]
rs6060812	0.80[EUR][1000 genomes]
rs6060821	0.80[EUR][1000 genomes]
rs6060832	0.80[EUR][1000 genomes]
rs6060843	0.83[ASN][1000 genomes]
rs6060870	0.80[EUR][1000 genomes]
rs6060912	0.84[EUR][1000 genomes]
rs6060923	0.83[EUR][1000 genomes]
rs6060924	0.83[ASN][1000 genomes]
rs6060937	0.83[EUR][1000 genomes]
rs6060945	0.83[ASN][1000 genomes]
rs6060948	0.83[ASN][1000 genomes]
rs6060952	0.83[ASN][1000 genomes]
rs6060953	0.83[ASN][1000 genomes]
rs6060955	0.83[ASN][1000 genomes]
rs6060960	0.87[EUR][1000 genomes]
rs6060979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6060983	0.83[ASN][1000 genomes]
rs6060986	0.83[ASN][1000 genomes]
rs6060987	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6060992	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6087775	0.83[ASN][1000 genomes]
rs6087778	0.84[EUR][1000 genomes]
rs6087783	0.83[ASN][1000 genomes]
rs6088997	0.83[ASN][1000 genomes]
rs6089054	0.83[ASN][1000 genomes]
rs6089055	0.83[EUR][1000 genomes]
rs6089058	0.84[EUR][1000 genomes]
rs6089067	0.83[ASN][1000 genomes]
rs6089070	0.86[EUR][1000 genomes]
rs6089071	0.87[EUR][1000 genomes]
rs6089093	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6089094	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6119651	0.80[EUR][1000 genomes]
rs6119718	0.84[EUR][1000 genomes]
rs6119720	0.84[EUR][1000 genomes]
rs6119725	0.87[EUR][1000 genomes]
rs6119729	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6121221	0.84[EUR][1000 genomes]
rs6121242	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6121245	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6121246	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7263175	0.84[EUR][1000 genomes]
rs7266148	0.86[EUR][1000 genomes]
rs7272062	0.80[EUR][1000 genomes]
rs73241710	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73903635	1.00[ASN][1000 genomes]
rs73903636	1.00[ASN][1000 genomes]
rs73903639	1.00[ASN][1000 genomes]
rs73903654	1.00[ASN][1000 genomes]
rs73903655	1.00[ASN][1000 genomes]
rs8118150	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8126355	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ID1	Distal transcriptional regulation
MYLK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)