SNP Report

Basic Infomation

Name	rs6060960 dbSNP
Location	chr:20,30394517
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1075698	0.89[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994249	0.93[EUR][1000 genomes]
rs1994250	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs1994251	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2376992	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs2376996	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs3181073	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs3203770	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4518038	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs57726761	0.93[EUR][1000 genomes]
rs6058421	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs6058448	0.94[CEU][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6058450	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6058460	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6058463	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6058470	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs6060446	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060633	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs6060644	0.93[EUR][1000 genomes]
rs6060679	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6060763	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6060793	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs6060812	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6060821	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6060832	0.93[EUR][1000 genomes]
rs6060870	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6060912	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6060923	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6060937	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6060978	0.87[EUR][1000 genomes]
rs6060979	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs6060987	0.82[EUR][1000 genomes]
rs6060992	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs6087778	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6088962	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs6089050	0.91[EUR][1000 genomes]
rs6089055	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6089058	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6089070	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes]
rs6089071	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6089093	0.84[ASW][hapmap];0.95[CEU][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs6089094	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs6119651	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes]
rs6119718	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6119720	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6119725	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6119729	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs6120970	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6121209	0.91[EUR][1000 genomes]
rs6121221	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6121242	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs6121245	0.82[EUR][1000 genomes]
rs6121246	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs7263175	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7266148	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs7272062	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs73241710	0.82[EUR][1000 genomes]
rs7354225	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs8118150	0.84[EUR][1000 genomes]
rs8126355	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TPX2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)