SNP Report

Basic Infomation

Name	rs7266148 dbSNP
Location	chr:20,30431070
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1075698	0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs1994250	0.94[CEU][hapmap]
rs1994251	0.94[CEU][hapmap]
rs2376992	0.92[CEU][hapmap]
rs2376996	0.94[CEU][hapmap]
rs3181073	0.94[CEU][hapmap]
rs3203770	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs4518038	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs6058421	0.93[CEU][hapmap]
rs6058448	0.93[CEU][hapmap]
rs6058450	0.94[CEU][hapmap];0.81[YRI][hapmap]
rs6058460	0.94[CEU][hapmap];0.81[YRI][hapmap]
rs6058463	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs6058470	0.94[CEU][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6060633	0.94[CEU][hapmap]
rs6060679	0.94[CEU][hapmap]
rs6060763	0.94[CEU][hapmap]
rs6060793	0.93[CEU][hapmap]
rs6060812	0.94[CEU][hapmap]
rs6060821	0.94[CEU][hapmap]
rs6060870	0.93[CEU][hapmap]
rs6060912	0.92[CEU][hapmap];0.80[YRI][hapmap]
rs6060923	0.93[CEU][hapmap];0.81[YRI][hapmap]
rs6060960	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs6060978	0.86[EUR][1000 genomes]
rs6060979	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6060987	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6060992	0.94[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6087778	0.94[CEU][hapmap];0.80[YRI][hapmap]
rs6088962	0.93[CEU][hapmap]
rs6089055	0.94[CEU][hapmap]
rs6089058	0.94[CEU][hapmap];0.81[YRI][hapmap]
rs6089070	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs6089071	0.94[CEU][hapmap];0.80[YRI][hapmap];0.82[EUR][1000 genomes]
rs6089093	0.87[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6089094	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs6119651	0.94[CEU][hapmap]
rs6119718	0.94[CEU][hapmap];0.80[YRI][hapmap]
rs6119720	0.94[CEU][hapmap];0.80[YRI][hapmap]
rs6119725	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs6119729	0.94[CEU][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6121242	0.93[CEU][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6121245	0.94[EUR][1000 genomes]
rs6121246	0.81[CEU][hapmap];0.97[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7272062	0.94[CEU][hapmap]
rs73241710	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7354225	0.94[CEU][hapmap]
rs8118150	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000226239	Distal transcriptional regulation
DUSP15	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)