SNP Report
Basic Infomation
| Name | rs6060987 dbSNP |
|---|---|
| Location | chr:20,30427077 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1075698 | 0.82[EUR][1000 genomes] |
| rs1887732 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs3203770 | 0.82[EUR][1000 genomes] |
| rs4518038 | 0.88[EUR][1000 genomes] |
| rs6058463 | 0.81[EUR][1000 genomes] |
| rs6058470 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6060960 | 0.82[EUR][1000 genomes] |
| rs6060978 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6060979 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6060992 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6089070 | 0.81[EUR][1000 genomes] |
| rs6089071 | 0.82[EUR][1000 genomes] |
| rs6089093 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6089094 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119725 | 0.82[EUR][1000 genomes] |
| rs6119729 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6121242 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6121245 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6121246 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7266148 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73241710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8118150 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDRG1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014