SNP Report
Basic Infomation
| Name | rs6060812 dbSNP |
|---|---|
| Location | chr:20,30292803 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 59)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1075698 | 0.84[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs1994249 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1994250 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1994251 | 1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2376992 | 0.94[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2376996 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs3181073 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3203770 | 0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs4518038 | 0.94[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs57726761 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058421 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058448 | 0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058450 | 0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058460 | 0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058463 | 0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6058470 | 0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs6060446 | 1.00[MEX][hapmap];0.86[TSI][hapmap] |
| rs6060563 | 0.81[MKK][hapmap] |
| rs6060633 | 1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6060644 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6060679 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6060763 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6060793 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6060821 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6060832 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6060870 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6060912 | 0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6060923 | 0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6060937 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6060960 | 0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs6060978 | 0.80[EUR][1000 genomes] |
| rs6060979 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6060992 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs6087778 | 0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6088962 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6089050 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6089055 | 0.95[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6089058 | 0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6089070 | 0.95[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6089071 | 0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs6089093 | 0.89[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap] |
| rs6089094 | 0.95[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs6119651 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6119718 | 0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6119720 | 0.89[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6119725 | 0.95[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs6119729 | 0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs6120719 | 0.88[MEX][hapmap] |
| rs6120970 | 1.00[MEX][hapmap];0.86[TSI][hapmap] |
| rs6121124 | 0.88[AFR][1000 genomes] |
| rs6121209 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6121221 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6121242 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6121246 | 0.88[CEU][hapmap] |
| rs7263175 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7266148 | 0.94[CEU][hapmap] |
| rs7272062 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7354225 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes] |
| rs8126355 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ID1 | Distal transcriptional regulation |
| MIR3193 | Distal transcriptional regulation |
| ENSG00000268457 | Distal transcriptional regulation |
| BCL2L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FRG1B | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014