SNP Report

Basic Infomation

Name	rs6060446 dbSNP
Location	chr:20,30231637
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 88)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11906851	0.86[CEU][hapmap]
rs1406920	0.86[CEU][hapmap]
rs15817	0.86[CEU][hapmap]
rs2376862	0.86[CEU][hapmap]
rs2376863	0.86[CEU][hapmap]
rs2889488	0.86[CEU][hapmap]
rs3181073	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs3203770	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs45557936	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4607	0.86[CEU][hapmap]
rs6057998	0.86[CEU][hapmap]
rs6058022	0.86[CEU][hapmap]
rs6058033	0.86[CEU][hapmap]
rs6058035	0.86[CEU][hapmap]
rs6058069	0.86[CEU][hapmap]
rs6058088	0.86[CEU][hapmap]
rs6058110	0.86[CEU][hapmap]
rs6058189	0.86[CEU][hapmap]
rs6058197	0.86[CEU][hapmap]
rs6058463	1.00[MEX][hapmap];0.83[TSI][hapmap]
rs6058470	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6059690	0.85[CEU][hapmap]
rs6059702	0.86[CEU][hapmap]
rs6059727	0.86[CEU][hapmap]
rs6059781	0.85[CEU][hapmap]
rs6059806	0.86[CEU][hapmap]
rs6059899	0.85[CEU][hapmap]
rs6059906	0.86[CEU][hapmap]
rs6059929	0.92[CEU][hapmap]
rs6059930	0.86[CEU][hapmap]
rs6059952	0.86[CEU][hapmap]
rs6059980	0.86[CEU][hapmap]
rs6059981	0.86[CEU][hapmap]
rs6059983	0.86[CEU][hapmap]
rs6059984	0.86[CEU][hapmap]
rs6060002	0.86[CEU][hapmap]
rs6060007	0.86[CEU][hapmap]
rs6060089	0.86[CEU][hapmap]
rs6060210	0.83[CEU][hapmap]
rs6060260	0.86[CEU][hapmap]
rs6060261	0.92[CEU][hapmap]
rs6060262	0.86[CEU][hapmap]
rs6060286	0.86[CEU][hapmap]
rs6060323	0.86[CEU][hapmap]
rs6060344	0.86[CEU][hapmap]
rs6060425	0.91[EUR][1000 genomes]
rs6060679	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060763	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060812	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060821	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060870	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060960	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6060979	0.83[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6060992	1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6087711	0.92[EUR][1000 genomes]
rs6087716	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6087778	0.90[MEX][hapmap];0.86[TSI][hapmap]
rs6088462	0.86[CEU][hapmap]
rs6088853	0.91[EUR][1000 genomes]
rs6088854	0.88[EUR][1000 genomes]
rs6088855	0.96[EUR][1000 genomes]
rs6088856	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6088857	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6088858	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6088864	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6089070	0.83[TSI][hapmap]
rs6089071	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6089093	1.00[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap]
rs6119610	0.87[CEU][hapmap]
rs6119651	1.00[MEX][hapmap];0.83[TSI][hapmap]
rs6119718	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6119720	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6119729	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6120670	0.92[CEU][hapmap]
rs6120704	0.86[CEU][hapmap]
rs6120713	0.86[CEU][hapmap]
rs6120719	0.86[CEU][hapmap];0.88[MEX][hapmap]
rs6120731	0.86[CEU][hapmap]
rs6120815	0.86[CEU][hapmap]
rs6120890	0.86[CEU][hapmap]
rs6120937	0.86[CEU][hapmap]
rs6120950	0.91[EUR][1000 genomes]
rs6120970	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7266471	0.86[CEU][hapmap]
rs7269866	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7272062	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs8121699	0.86[CEU][hapmap]
rs879597	0.86[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
COX4I2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)