SNP Report
Basic Infomation
| Name | rs6060425 dbSNP |
|---|---|
| Location | chr:20,30224355 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 94)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1923026 | 0.87[AMR][1000 genomes] |
| rs2016742 | 0.87[AMR][1000 genomes] |
| rs2376864 | 0.87[AMR][1000 genomes] |
| rs2811 | 0.87[AMR][1000 genomes] |
| rs45557936 | 0.91[EUR][1000 genomes] |
| rs56090668 | 0.83[AMR][1000 genomes] |
| rs58757492 | 0.87[AMR][1000 genomes] |
| rs6058033 | 0.84[AMR][1000 genomes] |
| rs6058035 | 0.84[AMR][1000 genomes] |
| rs6058058 | 0.85[AMR][1000 genomes] |
| rs6058069 | 0.86[AMR][1000 genomes] |
| rs6058102 | 0.86[AMR][1000 genomes] |
| rs6058110 | 0.87[AMR][1000 genomes] |
| rs6058122 | 0.87[AMR][1000 genomes] |
| rs6058148 | 0.82[AMR][1000 genomes] |
| rs6058151 | 0.87[AMR][1000 genomes] |
| rs6058152 | 0.87[AMR][1000 genomes] |
| rs6058171 | 0.87[AMR][1000 genomes] |
| rs6058187 | 0.87[AMR][1000 genomes] |
| rs6058196 | 0.87[AMR][1000 genomes] |
| rs6058197 | 0.87[AMR][1000 genomes] |
| rs6058203 | 0.85[AMR][1000 genomes] |
| rs6059796 | 0.84[AMR][1000 genomes] |
| rs6059806 | 0.84[AMR][1000 genomes] |
| rs6059846 | 0.84[AMR][1000 genomes] |
| rs6059874 | 0.86[AMR][1000 genomes] |
| rs6059889 | 0.87[AMR][1000 genomes] |
| rs6059899 | 0.87[AMR][1000 genomes] |
| rs6059979 | 0.84[AMR][1000 genomes] |
| rs6059980 | 0.86[AMR][1000 genomes] |
| rs6059984 | 0.84[AMR][1000 genomes] |
| rs6060007 | 0.86[AMR][1000 genomes] |
| rs6060086 | 0.84[AMR][1000 genomes] |
| rs6060089 | 0.86[AMR][1000 genomes] |
| rs6060116 | 0.89[AMR][1000 genomes] |
| rs6060134 | 0.87[AMR][1000 genomes] |
| rs6060144 | 0.85[AMR][1000 genomes] |
| rs6060145 | 0.85[AMR][1000 genomes] |
| rs6060171 | 0.87[AMR][1000 genomes] |
| rs6060174 | 0.87[AMR][1000 genomes] |
| rs6060195 | 0.87[AMR][1000 genomes] |
| rs6060198 | 0.87[AMR][1000 genomes] |
| rs6060210 | 0.87[AMR][1000 genomes] |
| rs6060211 | 0.87[AMR][1000 genomes] |
| rs6060247 | 0.85[AMR][1000 genomes] |
| rs6060249 | 0.87[AMR][1000 genomes] |
| rs6060252 | 0.83[AMR][1000 genomes] |
| rs6060260 | 0.87[AMR][1000 genomes] |
| rs6060261 | 0.87[AMR][1000 genomes] |
| rs6060263 | 0.87[AMR][1000 genomes] |
| rs6060286 | 0.87[AMR][1000 genomes] |
| rs6060289 | 0.87[AMR][1000 genomes] |
| rs6060291 | 0.87[AMR][1000 genomes] |
| rs6060295 | 0.87[AMR][1000 genomes] |
| rs6060297 | 0.87[AMR][1000 genomes] |
| rs6060323 | 0.84[AMR][1000 genomes] |
| rs6060344 | 0.87[AMR][1000 genomes] |
| rs6060399 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs6060409 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs6060446 | 0.91[EUR][1000 genomes] |
| rs6087710 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs6087711 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6087716 | 0.91[EUR][1000 genomes] |
| rs6088736 | 0.87[AMR][1000 genomes] |
| rs6088853 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6088854 | 0.88[EUR][1000 genomes] |
| rs6088855 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6088856 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6088857 | 0.82[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6088858 | 0.91[EUR][1000 genomes] |
| rs6088864 | 0.90[EUR][1000 genomes] |
| rs6119489 | 0.84[AMR][1000 genomes] |
| rs6119575 | 0.87[AMR][1000 genomes] |
| rs6119610 | 0.87[AFR][1000 genomes] |
| rs6120671 | 0.86[AMR][1000 genomes] |
| rs6120704 | 0.86[AMR][1000 genomes] |
| rs6120815 | 0.87[AMR][1000 genomes] |
| rs6120832 | 0.87[AMR][1000 genomes] |
| rs6120835 | 0.87[AMR][1000 genomes] |
| rs6120858 | 0.87[AMR][1000 genomes] |
| rs6120862 | 0.87[AMR][1000 genomes] |
| rs6120879 | 0.80[AMR][1000 genomes] |
| rs6120937 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs6120950 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6120970 | 0.87[EUR][1000 genomes] |
| rs6579238 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs6579239 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs7266471 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs7269866 | 0.92[EUR][1000 genomes] |
| rs7271374 | 0.85[AMR][1000 genomes] |
| rs7271671 | 0.82[AMR][1000 genomes] |
| rs7362275 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs750144 | 0.87[AMR][1000 genomes] |
| rs8126422 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COX4I2 | Proximal transcriptional regulation |
| BCL2L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014