SNP Report
Name | rs6088736   dbSNP |
---|---|
Location | chr:20,30195166 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11905777 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11906851 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1406920 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1471782 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs15817 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1923026 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2016742 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2376862 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2376863 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2376864 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2811 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2839862 | 0.96[EUR][1000 genomes] |
rs2889487 | 0.95[EUR][1000 genomes] |
rs2889488 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs3932482 | 0.96[EUR][1000 genomes] |
rs4607 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs56090668 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56153385 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58757492 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6057998 | 0.96[EUR][1000 genomes] |
rs6058004 | 0.96[EUR][1000 genomes] |
rs6058022 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058023 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058033 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058035 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058058 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6058069 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058085 | 0.93[EUR][1000 genomes] |
rs6058086 | 0.94[EUR][1000 genomes] |
rs6058087 | 0.94[EUR][1000 genomes] |
rs6058088 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6058102 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058103 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058110 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058116 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058122 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6058131 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058140 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6058148 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6058151 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058152 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058171 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058172 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058187 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058189 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058196 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058197 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6058203 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6059690 | 0.96[EUR][1000 genomes] |
rs6059696 | 0.95[EUR][1000 genomes] |
rs6059702 | 0.96[EUR][1000 genomes] |
rs6059704 | 0.91[EUR][1000 genomes] |
rs6059713 | 0.92[EUR][1000 genomes] |
rs6059727 | 0.96[EUR][1000 genomes] |
rs6059761 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059781 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6059795 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6059796 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6059806 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6059830 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059841 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059846 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059869 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6059870 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6059873 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059874 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059888 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6059889 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6059894 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059899 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059906 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059929 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059930 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059948 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059952 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6059958 | 0.88[EUR][1000 genomes] |
rs6059979 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059980 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059981 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059982 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059983 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6059984 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060002 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060007 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060066 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060075 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060076 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060086 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6060087 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060089 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060101 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060114 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6060116 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6060118 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6060134 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060142 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060144 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6060145 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6060171 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060174 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060195 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060198 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060203 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6060210 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060211 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060247 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060249 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060252 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060260 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060261 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060262 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060263 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060286 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060289 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060291 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060295 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6060296 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060297 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060323 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6060344 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060399 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060409 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6060425 | 0.87[AMR][1000 genomes] |
rs6087710 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6087711 | 0.82[AMR][1000 genomes] |
rs6088434 | 0.96[EUR][1000 genomes] |
rs6088438 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6088446 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6088451 | 0.96[EUR][1000 genomes] |
rs6088462 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6088592 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6088669 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6088749 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6088853 | 0.84[AMR][1000 genomes] |
rs6119457 | 0.96[EUR][1000 genomes] |
rs6119472 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6119489 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6119539 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6119574 | 0.92[EUR][1000 genomes] |
rs6119575 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120607 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120618 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120619 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120670 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120671 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120700 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120704 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120713 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120719 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120731 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6120815 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120832 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120835 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6120858 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120862 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120868 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6120879 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120890 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120937 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6120950 | 0.81[AMR][1000 genomes] |
rs6579238 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6579239 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7261354 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7266471 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7270584 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7271374 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7271671 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7273756 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7274269 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs73235714 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs73235789 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7346070 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7361893 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7362275 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs750144 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8121699 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs8126422 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs879597 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000231868 | Distal transcriptional regulation |
CSRNP2 | Distal transcriptional regulation |
ARF6 | Distal transcriptional regulation |
ENSG00000234327 | Distal transcriptional regulation |
ZNF232 | Distal transcriptional regulation |
PARK7 | Distal transcriptional regulation |
ENSG00000179743 | Distal transcriptional regulation |
HP1BP3 | Distal transcriptional regulation |
YARS | Distal transcriptional regulation |
S100PBP | Distal transcriptional regulation |
KIAA0319L | Distal transcriptional regulation |
NCDN | Distal transcriptional regulation |
PRPF3 | Distal transcriptional regulation |
S100A10 | Distal transcriptional regulation |
S100A4 | Distal transcriptional regulation |
ADAM15 | Distal transcriptional regulation |
SFT2D2 | Distal transcriptional regulation |
ENSG00000234678 | Distal transcriptional regulation |
ELF3 | Distal transcriptional regulation |
EIF2D | Distal transcriptional regulation |
IBA57 | Distal transcriptional regulation |
SLC29A3 | Distal transcriptional regulation |
STK32C | Distal transcriptional regulation |
LRRC27 | Distal transcriptional regulation |
ZNF143 | Distal transcriptional regulation |
ENSG00000268403 | Distal transcriptional regulation |
PIK3C2A | Distal transcriptional regulation |
NUCB2 | Distal transcriptional regulation |
CD59 | Distal transcriptional regulation |
INTS5 | Distal transcriptional regulation |
ENSG00000254458 | Distal transcriptional regulation |
ANAPC15 | Distal transcriptional regulation |
GPRC5A | Distal transcriptional regulation |
E2F7 | Distal transcriptional regulation |
ENSG00000248594 | Distal transcriptional regulation |
MAPKAPK5-AS1 | Distal transcriptional regulation |
MAPKAPK5 | Distal transcriptional regulation |
ANAPC5 | Distal transcriptional regulation |
DIAPH3 | Distal transcriptional regulation |
ING1 | Distal transcriptional regulation |
PYGL | Distal transcriptional regulation |
WDR89 | Distal transcriptional regulation |
RDH11 | Distal transcriptional regulation |
EMC7 | Distal transcriptional regulation |
SERF2 | Distal transcriptional regulation |
PGP | Distal transcriptional regulation |
NFATC3 | Distal transcriptional regulation |
MNT | Distal transcriptional regulation |
KIF18B | Distal transcriptional regulation |
ENSG00000267334 | Distal transcriptional regulation |
EFCAB13 | Distal transcriptional regulation |
H3F3B | Distal transcriptional regulation |
SOCS3 | Distal transcriptional regulation |
SLC16A3 | Distal transcriptional regulation |
SCAMP4 | Distal transcriptional regulation |
ADAT3 | Distal transcriptional regulation |
MFSD12 | Distal transcriptional regulation |
FAM32A | Distal transcriptional regulation |
LSM4 | Distal transcriptional regulation |
SOS1 | Distal transcriptional regulation |
IFIH1 | Distal transcriptional regulation |
GCA | Distal transcriptional regulation |
ATG9A | Distal transcriptional regulation |
ANKZF1 | Distal transcriptional regulation |
U2AF1 | Distal transcriptional regulation |
TOB2 | Distal transcriptional regulation |
TERC | Distal transcriptional regulation |
ENSG00000270141 | Distal transcriptional regulation |
SETD5-AS1 | Distal transcriptional regulation |
SETD5 | Distal transcriptional regulation |
SIAH2 | Distal transcriptional regulation |
SS18L2 | Distal transcriptional regulation |
RPL24 | Distal transcriptional regulation |
ENSG00000242622 | Distal transcriptional regulation |
OSBPL10 | Distal transcriptional regulation |
NDUFAF3 | Distal transcriptional regulation |
DALRD3 | Distal transcriptional regulation |
CEP120 | Distal transcriptional regulation |
DNAJC21 | Distal transcriptional regulation |
DIMT1 | Distal transcriptional regulation |
IPO11 | Distal transcriptional regulation |
HIST1H4H | Distal transcriptional regulation |
HIST1H3A | Distal transcriptional regulation |
SNHG5 | Distal transcriptional regulation |
SLC35B2 | Distal transcriptional regulation |
PPP1R10 | Distal transcriptional regulation |
ZNF775 | Distal transcriptional regulation |
REPIN1 | Distal transcriptional regulation |
PSMA2 | Distal transcriptional regulation |
ENSG00000256646 | Distal transcriptional regulation |
MRPL32 | Distal transcriptional regulation |
SNHG15 | Distal transcriptional regulation |
CYCS | Distal transcriptional regulation |
TUBB4B | Distal transcriptional regulation |
RPL12 | Distal transcriptional regulation |
ZFAND5 | Distal transcriptional regulation |
CDC26 | Distal transcriptional regulation |
PRPF4 | Distal transcriptional regulation |
CA5BP1 | Distal transcriptional regulation |
PRKX | Distal transcriptional regulation |
HM13-IT1 | Distal transcriptional regulation |
HM13 | Distal transcriptional regulation |
HM13-AS1 | Distal transcriptional regulation |
ENSG00000201770 | Distal transcriptional regulation |
ENSG00000268457 | Distal transcriptional regulation |
BCL2L1 | Distal transcriptional regulation |
GAS5 | Distal transcriptional regulation |
SNORD77 | Distal transcriptional regulation |
SNORD76 | Distal transcriptional regulation |
SNORD74 | Distal transcriptional regulation |
ENSG00000203499 | Distal transcriptional regulation |
TMEM203 | Distal transcriptional regulation |
NDOR1 | Distal transcriptional regulation |
TPX2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014