SNP Report
Basic Infomation
| Name | rs6057998 dbSNP |
|---|---|
| Location | chr:20,30096825 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 178)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11905777 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11906851 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1406920 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1471782 | 0.85[EUR][1000 genomes] |
| rs15817 | 0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1923026 | 0.96[EUR][1000 genomes] |
| rs2016742 | 0.96[EUR][1000 genomes] |
| rs2376862 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2376863 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2376864 | 0.96[EUR][1000 genomes] |
| rs2811 | 0.96[EUR][1000 genomes] |
| rs2839862 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2889487 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2889488 | 0.86[CEU][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs3932482 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4607 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56090668 | 0.96[EUR][1000 genomes] |
| rs56153385 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs58757492 | 0.96[EUR][1000 genomes] |
| rs6058004 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058022 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6058023 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6058033 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6058035 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6058058 | 0.89[EUR][1000 genomes] |
| rs6058069 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6058085 | 0.93[EUR][1000 genomes] |
| rs6058086 | 0.94[EUR][1000 genomes] |
| rs6058087 | 0.94[EUR][1000 genomes] |
| rs6058088 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058102 | 0.98[EUR][1000 genomes] |
| rs6058103 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6058110 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6058116 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6058122 | 0.94[EUR][1000 genomes] |
| rs6058131 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6058140 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058148 | 0.94[EUR][1000 genomes] |
| rs6058151 | 0.96[EUR][1000 genomes] |
| rs6058152 | 0.96[EUR][1000 genomes] |
| rs6058171 | 0.96[EUR][1000 genomes] |
| rs6058172 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058187 | 0.96[EUR][1000 genomes] |
| rs6058189 | 0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6058196 | 0.96[EUR][1000 genomes] |
| rs6058197 | 0.86[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6058203 | 0.96[EUR][1000 genomes] |
| rs6059690 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6059696 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6059702 | 1.00[CEU][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6059704 | 0.94[EUR][1000 genomes] |
| rs6059713 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6059727 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6059761 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059781 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6059795 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6059796 | 0.97[EUR][1000 genomes] |
| rs6059806 | 1.00[CEU][hapmap];0.88[MEX][hapmap];0.97[EUR][1000 genomes] |
| rs6059830 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059841 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059846 | 0.98[EUR][1000 genomes] |
| rs6059869 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6059870 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6059873 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059874 | 0.98[EUR][1000 genomes] |
| rs6059888 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6059889 | 0.87[EUR][1000 genomes] |
| rs6059894 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059899 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6059906 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059929 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6059930 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6059948 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059952 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6059958 | 0.89[ASW][hapmap];0.80[CEU][hapmap];0.80[LWK][hapmap];0.89[TSI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6059979 | 0.98[EUR][1000 genomes] |
| rs6059980 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6059981 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059982 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059983 | 1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6059984 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6060002 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060007 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6060066 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060075 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060076 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060086 | 0.96[EUR][1000 genomes] |
| rs6060087 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060089 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6060101 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060114 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6060116 | 0.96[EUR][1000 genomes] |
| rs6060118 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6060134 | 0.96[EUR][1000 genomes] |
| rs6060142 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6060144 | 0.93[EUR][1000 genomes] |
| rs6060145 | 0.93[EUR][1000 genomes] |
| rs6060171 | 0.93[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6060174 | 0.96[EUR][1000 genomes] |
| rs6060195 | 0.96[EUR][1000 genomes] |
| rs6060198 | 0.96[EUR][1000 genomes] |
| rs6060203 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6060210 | 0.83[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6060211 | 0.96[EUR][1000 genomes] |
| rs6060247 | 0.96[EUR][1000 genomes] |
| rs6060249 | 0.96[EUR][1000 genomes] |
| rs6060252 | 0.96[EUR][1000 genomes] |
| rs6060260 | 0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs6060261 | 0.84[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6060262 | 0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6060263 | 0.96[EUR][1000 genomes] |
| rs6060286 | 0.86[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6060289 | 0.96[EUR][1000 genomes] |
| rs6060291 | 0.96[EUR][1000 genomes] |
| rs6060295 | 0.95[EUR][1000 genomes] |
| rs6060296 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6060297 | 0.96[EUR][1000 genomes] |
| rs6060323 | 0.86[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs6060344 | 0.86[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6060399 | 0.96[EUR][1000 genomes] |
| rs6060409 | 0.96[EUR][1000 genomes] |
| rs6060446 | 0.86[CEU][hapmap] |
| rs6087710 | 0.91[EUR][1000 genomes] |
| rs6088434 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6088438 | 0.99[EUR][1000 genomes] |
| rs6088446 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6088451 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6088462 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6088592 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6088669 | 0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6088736 | 0.96[EUR][1000 genomes] |
| rs6088749 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6088857 | 0.93[CEU][hapmap] |
| rs6088864 | 0.86[CEU][hapmap] |
| rs6119457 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119472 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119489 | 0.98[EUR][1000 genomes] |
| rs6119539 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6119574 | 0.90[EUR][1000 genomes] |
| rs6119575 | 0.96[EUR][1000 genomes] |
| rs6120607 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120618 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120619 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120670 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120671 | 0.98[EUR][1000 genomes] |
| rs6120700 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120704 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6120713 | 1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120719 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120731 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6120815 | 0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs6120832 | 0.96[EUR][1000 genomes] |
| rs6120835 | 0.91[EUR][1000 genomes] |
| rs6120858 | 0.96[EUR][1000 genomes] |
| rs6120862 | 0.96[EUR][1000 genomes] |
| rs6120868 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6120879 | 0.96[EUR][1000 genomes] |
| rs6120890 | 0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6120937 | 0.86[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6120970 | 0.86[CEU][hapmap] |
| rs6579238 | 0.91[EUR][1000 genomes] |
| rs6579239 | 0.90[EUR][1000 genomes] |
| rs7261354 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7266471 | 0.86[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs7270584 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7271374 | 0.98[EUR][1000 genomes] |
| rs7271671 | 0.95[EUR][1000 genomes] |
| rs7273756 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7274269 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73235714 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73235789 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7346070 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7361893 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7362275 | 0.96[EUR][1000 genomes] |
| rs750144 | 0.93[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs8121699 | 0.82[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8126422 | 0.93[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs879597 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HM13 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014