SNP Report

Basic Infomation

Name	rs6088857 dbSNP
Location	chr:20,30226764
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 76)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11906851	0.93[CEU][hapmap]
rs1406920	0.93[CEU][hapmap]
rs15817	0.93[CEU][hapmap]
rs2376862	0.93[CEU][hapmap]
rs2376863	0.93[CEU][hapmap]
rs2889488	0.93[CEU][hapmap]
rs45557936	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4607	0.93[CEU][hapmap]
rs6057998	0.93[CEU][hapmap]
rs6058022	0.93[CEU][hapmap]
rs6058033	0.93[CEU][hapmap]
rs6058035	0.93[CEU][hapmap]
rs6058069	0.93[CEU][hapmap]
rs6058088	0.93[CEU][hapmap]
rs6058110	0.93[CEU][hapmap]
rs6058189	0.93[CEU][hapmap]
rs6058197	0.93[CEU][hapmap]
rs6059690	0.92[CEU][hapmap]
rs6059702	0.93[CEU][hapmap]
rs6059727	0.93[CEU][hapmap]
rs6059781	0.92[CEU][hapmap]
rs6059806	0.93[CEU][hapmap]
rs6059899	0.92[CEU][hapmap]
rs6059906	0.93[CEU][hapmap]
rs6059929	0.92[CEU][hapmap]
rs6059930	0.93[CEU][hapmap]
rs6059952	0.93[CEU][hapmap]
rs6059980	0.93[CEU][hapmap]
rs6059981	0.93[CEU][hapmap]
rs6059983	0.93[CEU][hapmap]
rs6059984	0.93[CEU][hapmap]
rs6060002	0.93[CEU][hapmap]
rs6060007	0.93[CEU][hapmap]
rs6060089	0.93[CEU][hapmap]
rs6060171	0.86[CEU][hapmap]
rs6060210	0.91[CEU][hapmap]
rs6060260	0.93[CEU][hapmap]
rs6060261	0.92[CEU][hapmap]
rs6060262	0.93[CEU][hapmap]
rs6060286	0.93[CEU][hapmap]
rs6060323	0.93[CEU][hapmap]
rs6060344	0.93[CEU][hapmap]
rs6060399	0.86[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs6060409	0.85[AFR][1000 genomes]
rs6060425	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6060446	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6087710	0.81[AFR][1000 genomes]
rs6087711	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6087716	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6088462	0.93[CEU][hapmap]
rs6088669	0.86[CEU][hapmap]
rs6088853	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6088854	0.88[EUR][1000 genomes]
rs6088855	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6088856	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6088858	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6088864	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6119610	0.81[CEU][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs6120670	0.92[CEU][hapmap]
rs6120704	0.93[CEU][hapmap]
rs6120713	0.93[CEU][hapmap]
rs6120719	0.93[CEU][hapmap]
rs6120731	0.93[CEU][hapmap]
rs6120815	0.93[CEU][hapmap]
rs6120890	0.93[CEU][hapmap]
rs6120937	0.93[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs6120950	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6120970	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6579238	0.82[AFR][1000 genomes]
rs7266471	0.93[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs7269866	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7362275	0.85[AFR][1000 genomes]
rs750144	0.86[CEU][hapmap]
rs8121699	0.93[CEU][hapmap]
rs8126422	0.86[CEU][hapmap]
rs879597	0.93[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
COX4I2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)