SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs15817	0.87[CEU][hapmap]
rs2889488	0.82[CEU][hapmap]
rs6058189	0.87[CEU][hapmap]
rs6058197	0.82[CEU][hapmap]
rs6060260	0.87[CEU][hapmap]
rs6060261	0.86[CEU][hapmap]
rs6060262	0.87[CEU][hapmap]
rs6060286	0.82[CEU][hapmap]
rs6060323	0.82[CEU][hapmap]
rs6060344	0.82[CEU][hapmap]
rs6060399	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs6060409	0.90[AFR][1000 genomes]
rs6060425	0.87[AFR][1000 genomes]
rs6060446	0.87[CEU][hapmap]
rs6087710	0.86[AFR][1000 genomes]
rs6087711	0.95[AFR][1000 genomes]
rs6088853	0.95[AFR][1000 genomes]
rs6088855	0.90[AFR][1000 genomes]
rs6088856	0.92[AFR][1000 genomes]
rs6088857	0.81[CEU][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs6088864	0.82[CEU][hapmap]
rs6120815	0.87[CEU][hapmap]
rs6120890	0.87[CEU][hapmap]
rs6120937	0.82[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs6120950	0.87[AFR][1000 genomes]
rs6120970	0.87[CEU][hapmap]
rs6579238	0.87[AFR][1000 genomes]
rs6579239	0.84[AFR][1000 genomes]
rs7266471	0.82[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs7362275	0.90[AFR][1000 genomes]
rs750144	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
COX4I2	Proximal transcriptional regulation
BCL2L1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)