SNP Report
Basic Infomation
| Name | rs6088856 dbSNP |
|---|---|
| Location | chr:20,30226543 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs45557936 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6060399 | 0.84[AFR][1000 genomes] |
| rs6060409 | 0.84[AFR][1000 genomes] |
| rs6060425 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6060446 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6087710 | 0.80[AFR][1000 genomes] |
| rs6087711 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6087716 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6088853 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6088854 | 0.91[EUR][1000 genomes] |
| rs6088855 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6088857 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6088858 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6088864 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6119610 | 0.92[AFR][1000 genomes] |
| rs6120937 | 0.84[AFR][1000 genomes] |
| rs6120950 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6120970 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6579238 | 0.81[AFR][1000 genomes] |
| rs7266471 | 0.82[AFR][1000 genomes] |
| rs7269866 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7362275 | 0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COX4I2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014