SNP Report
Basic Infomation
| Name | rs59590235 dbSNP |
|---|---|
| Location | chr:20,30384124 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1009453 | 0.83[ASN][1000 genomes] |
| rs10211752 | 0.83[ASN][1000 genomes] |
| rs10439607 | 0.83[ASN][1000 genomes] |
| rs17253922 | 0.83[ASN][1000 genomes] |
| rs2149281 | 0.83[ASN][1000 genomes] |
| rs2376998 | 0.83[ASN][1000 genomes] |
| rs2377317 | 0.83[ASN][1000 genomes] |
| rs4453755 | 0.83[ASN][1000 genomes] |
| rs45499294 | 1.00[EUR][1000 genomes] |
| rs58310546 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59021102 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60401084 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058462 | 0.83[ASN][1000 genomes] |
| rs6060627 | 0.83[ASN][1000 genomes] |
| rs6060652 | 0.83[ASN][1000 genomes] |
| rs6060768 | 0.83[ASN][1000 genomes] |
| rs6060775 | 0.83[ASN][1000 genomes] |
| rs6060843 | 0.83[ASN][1000 genomes] |
| rs6060924 | 0.83[ASN][1000 genomes] |
| rs6060945 | 0.83[ASN][1000 genomes] |
| rs6060948 | 0.83[ASN][1000 genomes] |
| rs6060952 | 0.83[ASN][1000 genomes] |
| rs6060953 | 0.83[ASN][1000 genomes] |
| rs6060955 | 0.83[ASN][1000 genomes] |
| rs6060978 | 1.00[ASN][1000 genomes] |
| rs6060979 | 1.00[ASN][1000 genomes] |
| rs6060983 | 0.83[ASN][1000 genomes] |
| rs6060986 | 0.83[ASN][1000 genomes] |
| rs6087775 | 0.83[ASN][1000 genomes] |
| rs6087783 | 0.83[ASN][1000 genomes] |
| rs6088997 | 0.83[ASN][1000 genomes] |
| rs6089054 | 0.83[ASN][1000 genomes] |
| rs6089067 | 0.83[ASN][1000 genomes] |
| rs73903635 | 1.00[ASN][1000 genomes] |
| rs73903636 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73903639 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73903648 | 0.85[AFR][1000 genomes] |
| rs73903649 | 0.85[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73903654 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73903655 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000230801 | Distal transcriptional regulation |
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
| TPX2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014