SNP Report

Basic Infomation

Name	rs17253922 dbSNP
Location	chr:20,30287696
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 86)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009453	1.00[ASN][1000 genomes]
rs1009454	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs10211752	1.00[ASN][1000 genomes]
rs10439607	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11167292	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11905334	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11907253	0.90[CEU][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs11907631	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11907651	0.84[EUR][1000 genomes]
rs12479577	0.87[TSI][hapmap]
rs12479946	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12480305	0.84[EUR][1000 genomes]
rs12480322	0.90[CEU][hapmap]
rs12480325	0.90[CEU][hapmap];0.94[TSI][hapmap]
rs12480630	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12481724	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1484998	0.90[CEU][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs17339879	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2149281	1.00[ASN][1000 genomes]
rs2182967	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2376998	1.00[ASN][1000 genomes]
rs2377317	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28763881	0.83[EUR][1000 genomes]
rs41293108	0.84[EUR][1000 genomes]
rs4453755	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs59590235	0.83[ASN][1000 genomes]
rs6058316	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6058381	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6058391	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6058443	0.98[EUR][1000 genomes]
rs6058456	0.90[EUR][1000 genomes]
rs6058461	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6058462	1.00[ASN][1000 genomes]
rs6058469	0.84[EUR][1000 genomes]
rs6058471	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6058473	0.89[CEU][hapmap];1.00[TSI][hapmap]
rs6060403	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6060531	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6060594	0.94[EUR][1000 genomes]
rs6060627	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6060652	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6060768	1.00[ASN][1000 genomes]
rs6060775	1.00[ASN][1000 genomes]
rs6060843	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6060855	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6060911	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6060913	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6060921	0.86[ASN][1000 genomes]
rs6060924	1.00[ASN][1000 genomes]
rs6060939	0.90[EUR][1000 genomes]
rs6060943	1.00[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs6060945	1.00[ASN][1000 genomes]
rs6060948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6060951	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6060952	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6060953	1.00[ASN][1000 genomes]
rs6060955	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6060963	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060964	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060965	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060970	0.84[EUR][1000 genomes]
rs6060971	0.84[EUR][1000 genomes]
rs6060972	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060973	0.84[EUR][1000 genomes]
rs6060975	0.84[EUR][1000 genomes]
rs6060976	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6060978	0.83[ASN][1000 genomes]
rs6060979	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs6060980	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6060983	1.00[ASN][1000 genomes]
rs6060985	0.81[EUR][1000 genomes]
rs6060986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6087775	1.00[ASN][1000 genomes]
rs6087783	1.00[ASN][1000 genomes]
rs6088997	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6089054	1.00[ASN][1000 genomes]
rs6089067	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6119728	0.86[ASN][1000 genomes]
rs7269370	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7270207	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs729838	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs73903635	0.83[ASN][1000 genomes]
rs73903636	0.83[ASN][1000 genomes]
rs73903639	0.83[ASN][1000 genomes]
rs73903654	0.83[ASN][1000 genomes]
rs73903655	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
BCL2L1	Distal transcriptional regulation
ENSG00000236559	Distal transcriptional regulation
ENSG00000268457	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)