SNP Report

Basic Infomation

Name	rs6060531 dbSNP
Location	chr:20,30243358
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009454	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs11167292	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11905334	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11905520	1.00[YRI][hapmap]
rs11907253	0.90[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs11907631	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11907651	0.84[EUR][1000 genomes]
rs12479577	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs12479946	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12480305	0.84[EUR][1000 genomes]
rs12480322	0.90[CEU][hapmap]
rs12480325	0.90[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs12480630	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12481724	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1484998	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs17253922	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17339879	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2182967	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs28763881	0.83[EUR][1000 genomes]
rs41293108	0.84[EUR][1000 genomes]
rs6058316	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6058381	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6058391	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6058443	0.92[EUR][1000 genomes]
rs6058456	0.90[EUR][1000 genomes]
rs6058461	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6058469	0.84[EUR][1000 genomes]
rs6058471	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6058473	0.89[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs6060594	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6060855	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6060911	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6060913	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6060939	0.90[EUR][1000 genomes]
rs6060943	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs6060951	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6060963	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060964	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060965	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060970	0.84[EUR][1000 genomes]
rs6060971	0.84[EUR][1000 genomes]
rs6060972	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6060973	0.84[EUR][1000 genomes]
rs6060975	0.84[EUR][1000 genomes]
rs6060980	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6060985	0.81[EUR][1000 genomes]
rs7269370	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7270207	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs729838	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9712389	1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
BCL2L1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)