SNP Report
Basic Infomation
| Name | rs6060913 dbSNP |
|---|---|
| Location | chr:20,30326840 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 107)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1009454 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10439608 | 1.00[ASN][1000 genomes] |
| rs1062794 | 1.00[ASN][1000 genomes] |
| rs11167292 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11167296 | 1.00[ASN][1000 genomes] |
| rs11905334 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11906212 | 1.00[ASN][1000 genomes] |
| rs11906890 | 1.00[ASN][1000 genomes] |
| rs11907253 | 1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11907631 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11907651 | 0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11907654 | 1.00[ASN][1000 genomes] |
| rs12479491 | 1.00[ASN][1000 genomes] |
| rs12479577 | 1.00[GIH][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs12479786 | 1.00[ASN][1000 genomes] |
| rs12479946 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480001 | 1.00[ASN][1000 genomes] |
| rs12480305 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480322 | 0.90[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480325 | 0.90[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480630 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480837 | 1.00[ASN][1000 genomes] |
| rs12481724 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1484994 | 1.00[ASN][1000 genomes] |
| rs1484998 | 1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17253922 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs17339879 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17341369 | 1.00[ASN][1000 genomes] |
| rs2182967 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28763881 | 0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28815498 | 1.00[ASN][1000 genomes] |
| rs35258121 | 1.00[ASN][1000 genomes] |
| rs41293108 | 0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41293118 | 1.00[ASN][1000 genomes] |
| rs4449218 | 1.00[ASN][1000 genomes] |
| rs45443696 | 1.00[ASN][1000 genomes] |
| rs58055626 | 1.00[ASN][1000 genomes] |
| rs58229361 | 1.00[ASN][1000 genomes] |
| rs60161975 | 1.00[ASN][1000 genomes] |
| rs6058316 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058317 | 1.00[ASN][1000 genomes] |
| rs6058352 | 1.00[ASN][1000 genomes] |
| rs6058381 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058384 | 1.00[ASN][1000 genomes] |
| rs6058391 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058443 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058449 | 1.00[ASN][1000 genomes] |
| rs6058456 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058457 | 1.00[ASN][1000 genomes] |
| rs6058461 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058465 | 1.00[ASN][1000 genomes] |
| rs6058468 | 1.00[ASN][1000 genomes] |
| rs6058469 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058471 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058473 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060531 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs6060594 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060599 | 1.00[ASN][1000 genomes] |
| rs6060621 | 1.00[ASN][1000 genomes] |
| rs6060716 | 1.00[ASN][1000 genomes] |
| rs6060796 | 1.00[ASN][1000 genomes] |
| rs6060855 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060857 | 1.00[ASN][1000 genomes] |
| rs6060911 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060915 | 1.00[ASN][1000 genomes] |
| rs6060919 | 1.00[ASN][1000 genomes] |
| rs6060920 | 1.00[ASN][1000 genomes] |
| rs6060922 | 1.00[ASN][1000 genomes] |
| rs6060926 | 1.00[ASN][1000 genomes] |
| rs6060931 | 1.00[ASN][1000 genomes] |
| rs6060933 | 1.00[ASN][1000 genomes] |
| rs6060938 | 1.00[ASN][1000 genomes] |
| rs6060939 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060941 | 1.00[ASN][1000 genomes] |
| rs6060943 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060944 | 1.00[ASN][1000 genomes] |
| rs6060950 | 1.00[ASN][1000 genomes] |
| rs6060951 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060954 | 1.00[ASN][1000 genomes] |
| rs6060962 | 1.00[ASN][1000 genomes] |
| rs6060963 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060964 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060965 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060970 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060971 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060972 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060973 | 0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060975 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060980 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060985 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6060995 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6061050 | 1.00[ASN][1000 genomes] |
| rs6087771 | 1.00[ASN][1000 genomes] |
| rs6087779 | 1.00[ASN][1000 genomes] |
| rs6088908 | 1.00[ASN][1000 genomes] |
| rs6089056 | 1.00[ASN][1000 genomes] |
| rs6119650 | 1.00[ASN][1000 genomes] |
| rs6119652 | 1.00[ASN][1000 genomes] |
| rs6121038 | 1.00[ASN][1000 genomes] |
| rs6121124 | 1.00[ASN][1000 genomes] |
| rs6121172 | 1.00[ASN][1000 genomes] |
| rs6121243 | 1.00[ASN][1000 genomes] |
| rs61745444 | 1.00[ASN][1000 genomes] |
| rs7269370 | 1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7270207 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs729838 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs879982 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TPX2 | Proximal transcriptional regulation |
| STMN1 | Distal transcriptional regulation |
| LHPP | Distal transcriptional regulation |
| ING1 | Distal transcriptional regulation |
| CDC25A | Distal transcriptional regulation |
| MPLKIP | Distal transcriptional regulation |
| C7orf10 | Distal transcriptional regulation |
| HM13 | Distal transcriptional regulation |
| HM13-AS1 | Distal transcriptional regulation |
| ENSG00000268457 | Distal transcriptional regulation |
| BCL2L1 | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| MIR3193 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014