SNP Report

Basic Infomation

Name	rs6060976 dbSNP
Location	chr:20,30414942
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009453	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10211752	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10439607	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10439608	0.94[CEU][hapmap]
rs1062794	1.00[CEU][hapmap]
rs12479491	0.96[CEU][hapmap]
rs1484994	0.95[CEU][hapmap]
rs17253922	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2149281	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2376998	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2377317	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4453755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6058462	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6058465	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6058468	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6060403	1.00[CHB][hapmap]
rs6060599	0.95[CEU][hapmap]
rs6060621	0.96[CEU][hapmap]
rs6060627	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs6060652	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6060768	0.86[ASN][1000 genomes]
rs6060775	0.86[ASN][1000 genomes]
rs6060843	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs6060857	0.96[CEU][hapmap]
rs6060915	1.00[CEU][hapmap]
rs6060919	1.00[CEU][hapmap]
rs6060922	1.00[CEU][hapmap]
rs6060924	0.86[ASN][1000 genomes]
rs6060938	1.00[CEU][hapmap]
rs6060941	1.00[CEU][hapmap]
rs6060944	1.00[CEU][hapmap]
rs6060945	0.86[ASN][1000 genomes]
rs6060948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060950	1.00[CEU][hapmap]
rs6060952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060953	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060962	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6060979	1.00[CHB][hapmap]
rs6060983	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6060986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6087771	0.95[CEU][hapmap]
rs6087775	0.86[ASN][1000 genomes]
rs6087783	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6087809	1.00[CHB][hapmap]
rs6088997	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6089054	0.86[ASN][1000 genomes]
rs6089056	0.95[CEU][hapmap]
rs6089067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6119650	0.95[CEU][hapmap]
rs6119652	0.96[CEU][hapmap]
rs6119728	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6121038	0.95[CEU][hapmap]
rs6121172	0.96[CEU][hapmap]
rs6121243	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs879982	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MYLK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)