SNP Report

Basic Infomation

Name	rs6060921 dbSNP
Location	chr:20,30333392
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009453	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10211752	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10439607	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10439608	0.88[EUR][1000 genomes]
rs1062794	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12479491	0.88[EUR][1000 genomes]
rs1484994	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17253922	0.86[ASN][1000 genomes]
rs2149281	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2376998	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2377317	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28815498	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4449218	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4453755	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs45443696	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6058317	0.88[EUR][1000 genomes]
rs6058352	0.88[EUR][1000 genomes]
rs6058384	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6058431	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6058449	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6058457	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6058462	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6058465	0.83[EUR][1000 genomes]
rs6058468	0.83[EUR][1000 genomes]
rs6060599	0.88[EUR][1000 genomes]
rs6060621	0.88[EUR][1000 genomes]
rs6060627	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060652	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060716	0.88[EUR][1000 genomes]
rs6060768	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060775	0.86[ASN][1000 genomes]
rs6060796	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6060843	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060857	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6060869	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6060915	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6060919	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6060920	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6060922	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6060924	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060926	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6060931	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6060932	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6060933	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6060938	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6060941	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6060944	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6060945	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060948	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060950	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6060952	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060953	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060954	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6060955	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6060962	0.83[EUR][1000 genomes]
rs6060983	0.86[ASN][1000 genomes]
rs6060986	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6087771	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6087775	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6087779	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6087783	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6088997	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6089054	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6089056	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6089067	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6119650	0.88[EUR][1000 genomes]
rs6119652	0.88[EUR][1000 genomes]
rs6119728	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6121038	0.91[EUR][1000 genomes]
rs6121124	0.88[EUR][1000 genomes]
rs6121172	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6121243	0.83[EUR][1000 genomes]
rs879982	0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TPX2	Distal transcriptional regulation
TPX2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)