SNP Report

Basic Infomation

Name	rs4971059 dbSNP
Location	chr:1,155148781
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10157801	0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[AMR][1000 genomes]
rs10908458	0.86[CHB][hapmap];0.90[AMR][1000 genomes]
rs11264333	0.81[AMR][1000 genomes]
rs11264334	0.89[AMR][1000 genomes]
rs11264335	0.90[AMR][1000 genomes]
rs11264337	0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs11264338	0.86[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap]
rs11264339	0.86[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11264341	0.81[CHD][hapmap]
rs12025371	0.86[CHB][hapmap]
rs12028043	0.86[CHB][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.89[AMR][1000 genomes]
rs12124306	0.83[AMR][1000 genomes]
rs12127609	0.89[AMR][1000 genomes]
rs12129003	0.84[AMR][1000 genomes]
rs12904	0.85[CHB][hapmap];0.81[CHD][hapmap];0.81[AMR][1000 genomes]
rs2066981	0.81[JPT][hapmap]
rs2070803	0.91[ASN][1000 genomes]
rs2075571	0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs34257409	0.90[AMR][1000 genomes]
rs3814316	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4072037	0.84[CHD][hapmap];0.91[JPT][hapmap]
rs423144	0.84[ASN][1000 genomes]
rs4246529	0.86[CHB][hapmap];0.81[CHD][hapmap];0.80[AMR][1000 genomes]
rs4276913	0.85[ASW][hapmap];0.86[CHB][hapmap];0.80[GIH][hapmap];0.92[AMR][1000 genomes]
rs4276914	0.81[ASN][1000 genomes]
rs4421576	0.86[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4460629	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs4745	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs4971052	0.90[AMR][1000 genomes]
rs4971054	0.82[AMR][1000 genomes]
rs4971066	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs4971073	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap]
rs4971076	0.90[AMR][1000 genomes]
rs4971078	0.90[AMR][1000 genomes]
rs4971079	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs4971085	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4971088	0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4971089	0.81[ASN][1000 genomes]
rs4971091	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4971093	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4971099	0.83[ASN][1000 genomes]
rs4971100	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4971101	0.91[ASN][1000 genomes]
rs7364524	0.90[AMR][1000 genomes]
rs7366775	0.84[ASN][1000 genomes]
rs7556304	0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs914615	0.91[JPT][hapmap]
rs9297	0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[AMR][1000 genomes]
rs9426886	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
KRTCAP2	Proximal transcriptional regulation
DPM3	Distal transcriptional regulation
GBAP1	Distal transcriptional regulation
GBA	Distal transcriptional regulation
THBS3	Distal transcriptional regulation
SCAMP3	Distal transcriptional regulation
EFNA1	Distal transcriptional regulation
SLC50A1	Distal transcriptional regulation
ENSG00000250784	Distal transcriptional regulation
RUSC1	Distal transcriptional regulation
RUSC1-AS1	Distal transcriptional regulation
KRTCAP2	RNA binding protein mediated regulation
TRIM46	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
WDR4	SCAN
MEIS2	seeQTL