SNP Report
Basic Infomation
| Name | rs4460629 dbSNP |
|---|---|
| Location | chr:1,155135335 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10157801 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs10908458 | 1.00[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs11264337 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264338 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264339 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12025371 | 0.92[CEU][hapmap];1.00[CHB][hapmap] |
| rs12028043 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs12127609 | 0.82[ASN][1000 genomes] |
| rs12411216 | 0.83[ASN][1000 genomes] |
| rs12752585 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12904 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs2066981 | 0.85[ASW][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap] |
| rs2974937 | 0.83[ASN][1000 genomes] |
| rs3814316 | 0.86[CHB][hapmap];0.82[CHD][hapmap] |
| rs4072037 | 0.92[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap] |
| rs4246529 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs4276913 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs4276914 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4421576 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4745 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap] |
| rs4971052 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs4971059 | 0.86[CHB][hapmap];0.84[CHD][hapmap] |
| rs4971066 | 0.86[CHB][hapmap];0.81[CHD][hapmap] |
| rs4971073 | 0.86[CHB][hapmap];0.87[CHD][hapmap] |
| rs4971076 | 0.92[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs4971077 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4971078 | 0.82[ASN][1000 genomes] |
| rs4971079 | 0.92[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4971085 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4971088 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4971089 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4971093 | 0.80[ASN][1000 genomes] |
| rs4971100 | 0.82[CHD][hapmap] |
| rs6665822 | 0.80[GIH][hapmap] |
| rs6676150 | 0.89[AFR][1000 genomes] |
| rs7364524 | 0.92[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs7535292 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7556304 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs760077 | 0.80[ASN][1000 genomes] |
| rs914615 | 0.85[ASW][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.86[YRI][hapmap] |
| rs9297 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EFNA1 | Distal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| ENSG00000250784 | Distal transcriptional regulation |
| DPM3 | Distal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014