SNP Report
Basic Infomation
| Name | rs4246529 dbSNP |
|---|---|
| Location | chr:1,155115260 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 69)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1001848 | 0.85[JPT][hapmap] |
| rs10157801 | 0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10908454 | 0.85[JPT][hapmap] |
| rs10908455 | 0.85[JPT][hapmap] |
| rs10908456 | 0.85[JPT][hapmap] |
| rs10908458 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11264306 | 0.85[JPT][hapmap] |
| rs11264314 | 0.82[JPT][hapmap] |
| rs11264319 | 0.85[JPT][hapmap] |
| rs11264327 | 0.81[EUR][1000 genomes] |
| rs11264329 | 0.85[JPT][hapmap] |
| rs11264333 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264334 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264335 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264337 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs11264338 | 1.00[CHB][hapmap];0.93[CHD][hapmap] |
| rs11264339 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs12025371 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12028043 | 0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12040970 | 0.85[JPT][hapmap] |
| rs12124306 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12127609 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12129003 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12145362 | 0.84[CEU][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs12904 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1462855 | 0.85[JPT][hapmap] |
| rs1870939 | 0.85[JPT][hapmap] |
| rs2066981 | 0.83[CHB][hapmap];0.89[CHD][hapmap] |
| rs2306124 | 0.85[JPT][hapmap] |
| rs34257409 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3765087 | 0.85[JPT][hapmap] |
| rs3766916 | 0.85[JPT][hapmap] |
| rs3814316 | 0.86[CHB][hapmap];0.84[MEX][hapmap] |
| rs4072037 | 0.92[CHB][hapmap];0.96[CHD][hapmap] |
| rs4276913 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4390169 | 1.00[ASN][1000 genomes] |
| rs4421576 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs4460629 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs4745 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4845407 | 0.85[JPT][hapmap] |
| rs4845408 | 0.85[JPT][hapmap] |
| rs4971052 | 0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971054 | 0.85[EUR][1000 genomes] |
| rs4971059 | 0.86[CHB][hapmap];0.81[CHD][hapmap];0.80[AMR][1000 genomes] |
| rs4971066 | 0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4971073 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4971076 | 0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971077 | 0.94[ASN][1000 genomes] |
| rs4971078 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971079 | 1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4971085 | 1.00[CHB][hapmap] |
| rs4971088 | 1.00[CHB][hapmap] |
| rs4971093 | 0.83[AMR][1000 genomes] |
| rs6427158 | 0.85[JPT][hapmap] |
| rs6665822 | 0.85[JPT][hapmap] |
| rs6668815 | 0.83[AFR][1000 genomes] |
| rs6676150 | 0.89[ASN][1000 genomes] |
| rs6693477 | 0.85[JPT][hapmap] |
| rs7364524 | 0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7365544 | 0.85[JPT][hapmap] |
| rs7367207 | 0.85[JPT][hapmap] |
| rs7367897 | 0.85[JPT][hapmap] |
| rs7368345 | 0.85[JPT][hapmap] |
| rs7534162 | 0.85[JPT][hapmap] |
| rs7535292 | 0.94[ASN][1000 genomes] |
| rs7548955 | 0.82[JPT][hapmap] |
| rs7556304 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs914615 | 0.84[CHB][hapmap] |
| rs9297 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DPM3 | Proximal transcriptional regulation |
| ENSG00000251780 | Proximal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014