SNP Report
Basic Infomation
| Name | rs2306124 dbSNP |
|---|---|
| Location | chr:1,155059851 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 68)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1001848 | 1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[AFR][1000 genomes] |
| rs10157801 | 0.85[JPT][hapmap] |
| rs10796938 | 1.00[ASN][1000 genomes] |
| rs10796939 | 0.90[ASN][1000 genomes] |
| rs10908454 | 0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10908455 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10908456 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10908458 | 0.85[JPT][hapmap] |
| rs11264304 | 0.85[JPT][hapmap] |
| rs11264306 | 1.00[JPT][hapmap];0.82[TSI][hapmap] |
| rs11264307 | 0.81[AFR][1000 genomes] |
| rs11264311 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11264312 | 1.00[ASN][1000 genomes] |
| rs11264313 | 0.97[ASN][1000 genomes] |
| rs11264314 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11264319 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11264321 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264322 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11264327 | 0.93[ASN][1000 genomes] |
| rs11264328 | 0.93[ASN][1000 genomes] |
| rs11264329 | 1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12025371 | 0.85[JPT][hapmap] |
| rs12026113 | 0.97[ASN][1000 genomes] |
| rs12028043 | 0.85[JPT][hapmap] |
| rs12039316 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12040970 | 1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12047986 | 0.86[AFR][1000 genomes] |
| rs12145362 | 0.88[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12904 | 0.85[JPT][hapmap] |
| rs1462855 | 1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1870939 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs35902694 | 0.85[JPT][hapmap] |
| rs3765087 | 1.00[JPT][hapmap] |
| rs3766916 | 1.00[JPT][hapmap] |
| rs3766918 | 1.00[ASN][1000 genomes] |
| rs3806256 | 0.85[JPT][hapmap] |
| rs4045192 | 0.85[JPT][hapmap] |
| rs4246529 | 0.85[JPT][hapmap] |
| rs4276913 | 0.85[JPT][hapmap] |
| rs4303067 | 0.84[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4361977 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4625273 | 1.00[ASN][1000 genomes] |
| rs4745 | 0.85[JPT][hapmap] |
| rs4845407 | 1.00[JPT][hapmap] |
| rs4845408 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4845708 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4971052 | 1.00[JPT][hapmap] |
| rs4971066 | 0.85[JPT][hapmap] |
| rs4971073 | 0.85[JPT][hapmap] |
| rs4971076 | 0.85[JPT][hapmap] |
| rs4971079 | 0.85[JPT][hapmap] |
| rs56112907 | 1.00[ASN][1000 genomes] |
| rs6427158 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6665822 | 1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs6693477 | 1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7364524 | 0.85[JPT][hapmap] |
| rs7364869 | 1.00[ASN][1000 genomes] |
| rs7365544 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7366138 | 0.95[ASN][1000 genomes] |
| rs7366355 | 1.00[ASN][1000 genomes] |
| rs7367207 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7367758 | 0.97[ASN][1000 genomes] |
| rs7367897 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7368345 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7534162 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7548955 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9297 | 0.85[JPT][hapmap] |
| rs9330263 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EFNA3 | Proximal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| ENSG00000250784 | Distal transcriptional regulation |
| UBE2Q1 | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| ADAM15 | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| ENSG00000232093 | Distal transcriptional regulation |
| PYGO2 | Distal transcriptional regulation |
| ENSG00000202027 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| DPM3 | Distal transcriptional regulation |
| EFNA3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014