SNP Report
Basic Infomation
| Name | rs11264311 dbSNP |
|---|---|
| Location | chr:1,155054743 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1001848 | 0.82[AFR][1000 genomes] |
| rs10908454 | 0.90[AMR][1000 genomes] |
| rs10908455 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs10908456 | 0.80[AMR][1000 genomes] |
| rs11264307 | 0.82[AFR][1000 genomes] |
| rs11264321 | 0.82[AMR][1000 genomes] |
| rs12039316 | 0.82[AMR][1000 genomes] |
| rs12047986 | 0.87[AFR][1000 genomes] |
| rs2306124 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4303067 | 0.80[AMR][1000 genomes] |
| rs4361977 | 0.81[AMR][1000 genomes] |
| rs4845708 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7367207 | 0.83[AMR][1000 genomes] |
| rs7367897 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EFNA3 | Proximal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| ENSG00000250784 | Distal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| MIR92B | Distal transcriptional regulation |
| THBS3 | Distal transcriptional regulation |
| ENSG00000231064 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| DPM3 | Distal transcriptional regulation |
| PYGO2 | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| ENSG00000232093 | Distal transcriptional regulation |
| ADAM15 | Distal transcriptional regulation |
| ENSG00000202027 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| EFNA3 | RNA binding protein mediated regulation |
| ENSG00000251246 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014