SNP Report
Basic Infomation
| Name | rs4845407 dbSNP |
|---|---|
| Location | chr:1,155024309 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1001848 | 1.00[JPT][hapmap] |
| rs10157801 | 0.85[JPT][hapmap] |
| rs10908454 | 1.00[JPT][hapmap] |
| rs10908455 | 1.00[JPT][hapmap] |
| rs10908456 | 1.00[JPT][hapmap] |
| rs10908458 | 0.85[JPT][hapmap] |
| rs11264304 | 0.85[JPT][hapmap] |
| rs11264306 | 1.00[JPT][hapmap] |
| rs11264314 | 1.00[JPT][hapmap] |
| rs11264319 | 1.00[JPT][hapmap] |
| rs11264329 | 1.00[JPT][hapmap] |
| rs12023499 | 0.86[CHB][hapmap] |
| rs12025371 | 0.85[JPT][hapmap] |
| rs12028043 | 0.85[JPT][hapmap] |
| rs12040970 | 1.00[JPT][hapmap] |
| rs12145362 | 1.00[JPT][hapmap] |
| rs12743272 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12904 | 0.85[JPT][hapmap] |
| rs1462855 | 1.00[JPT][hapmap] |
| rs17723260 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1870939 | 1.00[JPT][hapmap] |
| rs2306124 | 1.00[JPT][hapmap] |
| rs35902694 | 0.85[JPT][hapmap] |
| rs3765087 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3766916 | 1.00[JPT][hapmap] |
| rs3806256 | 0.85[JPT][hapmap] |
| rs4045192 | 0.85[JPT][hapmap] |
| rs4246529 | 0.85[JPT][hapmap] |
| rs4276913 | 0.85[JPT][hapmap] |
| rs4745 | 0.85[JPT][hapmap] |
| rs4845408 | 1.00[JPT][hapmap] |
| rs4971052 | 1.00[JPT][hapmap] |
| rs4971066 | 0.85[JPT][hapmap] |
| rs4971073 | 0.85[JPT][hapmap] |
| rs4971076 | 0.85[JPT][hapmap] |
| rs4971079 | 0.85[JPT][hapmap] |
| rs6427158 | 1.00[JPT][hapmap] |
| rs6665822 | 1.00[JPT][hapmap] |
| rs6693477 | 1.00[JPT][hapmap] |
| rs7364524 | 0.85[JPT][hapmap] |
| rs7365544 | 1.00[JPT][hapmap] |
| rs7367207 | 1.00[JPT][hapmap] |
| rs7367897 | 1.00[JPT][hapmap] |
| rs7368345 | 1.00[JPT][hapmap] |
| rs7534162 | 1.00[JPT][hapmap] |
| rs7548955 | 1.00[JPT][hapmap] |
| rs9297 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ADAM15 | Proximal transcriptional regulation |
| USP11 | Distal transcriptional regulation |
| PBXIP1 | Distal transcriptional regulation |
| PYGO2 | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| CKS1B | Distal transcriptional regulation |
| FLAD1 | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| MIR4258 | Distal transcriptional regulation |
| ENSG00000232093 | Distal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
| MIR92B | Distal transcriptional regulation |
| THBS3 | Distal transcriptional regulation |
| PMVK | Distal transcriptional regulation |
| LENEP | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| ENSG00000202027 | Distal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| CKAP2 | Distal transcriptional regulation |
| ADAM15 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014