SNP Report
Basic Infomation
| Name | rs17723260 dbSNP |
|---|---|
| Location | chr:1,155058663 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264305 | 1.00[ASN][1000 genomes] |
| rs12743272 | 1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34522020 | 0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3765087 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs4845407 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs4971092 | 1.00[CHD][hapmap];0.87[GIH][hapmap] |
| rs6427184 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HSPA1B | Distal transcriptional regulation |
| EFNA4 | Distal transcriptional regulation |
| ENSG00000251246 | Distal transcriptional regulation |
| CKS1B | Distal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| MIR92B | Distal transcriptional regulation |
| THBS3 | Distal transcriptional regulation |
| ENSG00000231064 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| DPM3 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| ENSG00000250784 | Distal transcriptional regulation |
| UBE2Q1 | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| ADAM15 | Distal transcriptional regulation |
| MTX1 | Distal transcriptional regulation |
| CLK2 | Distal transcriptional regulation |
| PYGO2 | Distal transcriptional regulation |
| FLAD1 | Distal transcriptional regulation |
| LENEP | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| ENSG00000232093 | Distal transcriptional regulation |
| RUSC1 | Distal transcriptional regulation |
| RUSC1-AS1 | Distal transcriptional regulation |
| PMVK | Distal transcriptional regulation |
| ENSG00000202027 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| EFNA3 | RNA binding protein mediated regulation |
| ENSG00000251246 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014