SNP Report
Basic Infomation
| Name | rs12743272 dbSNP |
|---|---|
| Location | chr:1,155033334 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264305 | 1.00[ASN][1000 genomes] |
| rs17723260 | 1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34522020 | 1.00[ASN][1000 genomes] |
| rs3765087 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4845407 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4971092 | 1.00[CHD][hapmap];0.83[GIH][hapmap] |
| rs6427184 | 0.93[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ADAM15 | Proximal transcriptional regulation |
| EFNA3 | Proximal transcriptional regulation |
| EFNA4 | Proximal transcriptional regulation |
| ENSG00000251246 | Proximal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| PMVK | Distal transcriptional regulation |
| PBXIP1 | Distal transcriptional regulation |
| PYGO2 | Distal transcriptional regulation |
| ADAM15 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014