SNP Report

Basic Infomation

Name	rs12904 dbSNP
Location	chr:1,155106697
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 71)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1001848	0.85[JPT][hapmap]
rs10157801	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10908454	0.85[JPT][hapmap]
rs10908455	0.85[JPT][hapmap]
rs10908456	0.85[JPT][hapmap]
rs10908458	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264306	0.85[JPT][hapmap]
rs11264314	0.82[JPT][hapmap]
rs11264319	0.85[JPT][hapmap]
rs11264327	0.83[EUR][1000 genomes]
rs11264329	0.85[JPT][hapmap]
rs11264333	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264334	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11264335	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11264337	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs11264338	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs11264339	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs11807418	0.81[EUR][1000 genomes]
rs12025371	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12028043	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12040970	0.85[JPT][hapmap]
rs12124306	0.85[EUR][1000 genomes]
rs12127609	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12129003	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12137164	0.81[EUR][1000 genomes]
rs12145362	0.84[CEU][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs1462855	0.85[JPT][hapmap]
rs1870939	0.85[JPT][hapmap]
rs2066981	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs2306124	0.85[JPT][hapmap]
rs34257409	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3765087	0.85[JPT][hapmap]
rs3766916	0.85[JPT][hapmap]
rs3814316	0.85[CHB][hapmap]
rs4072037	0.92[CHB][hapmap];0.96[CHD][hapmap]
rs4246529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276913	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4390169	1.00[ASN][1000 genomes]
rs4421576	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs4460629	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs4745	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4845407	0.85[JPT][hapmap]
rs4845408	0.85[JPT][hapmap]
rs4971052	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4971054	0.82[EUR][1000 genomes]
rs4971059	0.85[CHB][hapmap];0.81[CHD][hapmap];0.81[AMR][1000 genomes]
rs4971066	0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4971073	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4971076	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4971077	0.94[ASN][1000 genomes]
rs4971078	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4971079	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4971085	1.00[CHB][hapmap]
rs4971088	1.00[CHB][hapmap]
rs4971093	0.84[AMR][1000 genomes]
rs6427158	0.85[JPT][hapmap]
rs6665822	0.85[JPT][hapmap]
rs6676150	0.89[ASN][1000 genomes]
rs6693477	0.85[JPT][hapmap]
rs7364524	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7365544	0.85[JPT][hapmap]
rs7366138	0.82[EUR][1000 genomes]
rs7367207	0.85[JPT][hapmap]
rs7367897	0.85[JPT][hapmap]
rs7368345	0.85[JPT][hapmap]
rs7534162	0.85[JPT][hapmap]
rs7535292	0.94[ASN][1000 genomes]
rs7548955	0.82[JPT][hapmap]
rs7556304	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs914615	0.83[CHB][hapmap]
rs9297	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC50A1	Proximal transcriptional regulation
EFNA1	Proximal transcriptional regulation
ENSG00000250784	Proximal transcriptional regulation
MUC1	Distal transcriptional regulation
MIR92B	Distal transcriptional regulation
DPM3	Distal transcriptional regulation
EFNA3	Distal transcriptional regulation
ENSG00000231064	Distal transcriptional regulation
THBS3	Distal transcriptional regulation
MTX1	Distal transcriptional regulation
GBAP1	Distal transcriptional regulation
PLEKHO1	Distal transcriptional regulation
SHC1	Distal transcriptional regulation
CKS1B	Distal transcriptional regulation
MIR4258	Distal transcriptional regulation
ZBTB7B	Distal transcriptional regulation
ADAM15	Distal transcriptional regulation
EFNA4	Distal transcriptional regulation
ENSG00000251246	Distal transcriptional regulation
KRTCAP2	Distal transcriptional regulation
TRIM46	Distal transcriptional regulation
UBAP2L	Distal transcriptional regulation
C1orf43	Distal transcriptional regulation
EFNA1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)