SNP Report
Basic Infomation
| Name | rs4072037 dbSNP |
|---|---|
| Location | chr:1,155162067 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10157801 | 0.92[CHB][hapmap];0.96[CHD][hapmap] |
| rs10908458 | 0.92[CHB][hapmap] |
| rs11264337 | 0.84[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap] |
| rs11264338 | 0.84[ASW][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap] |
| rs11264339 | 0.84[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs12025371 | 0.92[CHB][hapmap] |
| rs12028043 | 0.92[CHB][hapmap];1.00[CHD][hapmap] |
| rs12411216 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12904 | 0.92[CHB][hapmap];0.96[CHD][hapmap] |
| rs2066981 | 0.92[ASW][hapmap];0.92[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2075571 | 0.86[CHB][hapmap];0.91[JPT][hapmap] |
| rs2974937 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs370545 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3814316 | 0.82[CHD][hapmap];0.91[JPT][hapmap] |
| rs4246529 | 0.92[CHB][hapmap];0.96[CHD][hapmap] |
| rs4276913 | 0.92[CHB][hapmap];0.93[CHD][hapmap] |
| rs4421576 | 0.84[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs4460629 | 0.92[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap] |
| rs4745 | 0.92[CHB][hapmap];0.96[CHD][hapmap] |
| rs4971052 | 0.81[CHB][hapmap] |
| rs4971059 | 0.84[CHD][hapmap];0.91[JPT][hapmap] |
| rs4971066 | 0.81[CHD][hapmap] |
| rs4971073 | 0.87[CHD][hapmap] |
| rs4971076 | 0.85[CHB][hapmap] |
| rs4971079 | 0.84[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.80[YRI][hapmap] |
| rs4971085 | 0.92[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap] |
| rs4971088 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs4971100 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap] |
| rs7364524 | 0.85[CHB][hapmap] |
| rs7556304 | 0.84[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap] |
| rs760077 | 0.86[ASN][1000 genomes] |
| rs914615 | 0.92[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9297 | 0.92[CHB][hapmap];0.96[CHD][hapmap] |
| rs9426886 | 0.86[CHB][hapmap];0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KRTCAP2 | Proximal transcriptional regulation |
| MUC1 | Proximal transcriptional regulation |
| MIR92B | Proximal transcriptional regulation |
| ENSG00000231064 | Proximal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| ENSG00000250784 | Distal transcriptional regulation |
| RUSC1 | Distal transcriptional regulation |
| RUSC1-AS1 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| FAM189B | Distal transcriptional regulation |
| GBA | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| FDPS | Distal transcriptional regulation |
| CKS1B | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| ENSG00000202027 | Distal transcriptional regulation |
| CLK2 | Distal transcriptional regulation |
| MUC1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014