SNP Report

Basic Infomation

Name	rs12411216 dbSNP
Location	chr:1,155164480
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11264337	0.83[ASN][1000 genomes]
rs11264338	0.83[ASN][1000 genomes]
rs11264339	0.85[ASN][1000 genomes]
rs12752585	0.83[ASN][1000 genomes]
rs2066981	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2070803	0.81[ASN][1000 genomes]
rs2075571	0.82[ASN][1000 genomes]
rs2974937	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370545	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4072037	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs423144	0.83[ASN][1000 genomes]
rs4276914	0.85[ASN][1000 genomes]
rs4421576	0.85[ASN][1000 genomes]
rs4460629	0.83[ASN][1000 genomes]
rs4971085	0.83[ASN][1000 genomes]
rs4971088	0.87[ASN][1000 genomes]
rs4971089	0.85[ASN][1000 genomes]
rs4971100	0.81[ASN][1000 genomes]
rs4971101	0.81[ASN][1000 genomes]
rs7366775	0.82[ASN][1000 genomes]
rs7556304	0.83[ASN][1000 genomes]
rs760077	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs914615	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9426886	0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
KRTCAP2	Proximal transcriptional regulation
MUC1	Proximal transcriptional regulation
MIR92B	Proximal transcriptional regulation
ENSG00000231064	Proximal transcriptional regulation
SPA17	Distal transcriptional regulation
SIAE	Distal transcriptional regulation
RPS3	Distal transcriptional regulation
ACIN1	Distal transcriptional regulation
C14orf119	Distal transcriptional regulation
MAP1LC3B	Distal transcriptional regulation
FBXO31	Distal transcriptional regulation
MRM1	Distal transcriptional regulation
ENSG00000188825	Distal transcriptional regulation
MIR4530	Distal transcriptional regulation
JUNB	Distal transcriptional regulation
ABCF3	Distal transcriptional regulation
ECT2	Distal transcriptional regulation
RICTOR	Distal transcriptional regulation
RPS10	Distal transcriptional regulation
RPL30	Distal transcriptional regulation
C1orf43	Distal transcriptional regulation
UBAP2L	Distal transcriptional regulation
EFNA3	Distal transcriptional regulation
SLC50A1	Distal transcriptional regulation
ENSG00000250784	Distal transcriptional regulation
DPM3	Distal transcriptional regulation
GBAP1	Distal transcriptional regulation
GBA	Distal transcriptional regulation
FDPS	Distal transcriptional regulation
MSTO1	Distal transcriptional regulation
ENSG00000232519	Distal transcriptional regulation
MSTO2P	Distal transcriptional regulation
ASH1L-AS1	Distal transcriptional regulation
ASH1L	Distal transcriptional regulation
CLK2	Distal transcriptional regulation
RUSC1	Distal transcriptional regulation
SHC1	Distal transcriptional regulation
CKS1B	Distal transcriptional regulation
RUSC1-AS1	Distal transcriptional regulation
SCAMP3	Distal transcriptional regulation
FAM189B	Distal transcriptional regulation
PKLR	Distal transcriptional regulation
TUBD1	Distal transcriptional regulation
RPS6KB1	Distal transcriptional regulation
ADAM15	Distal transcriptional regulation
EFNA4	Distal transcriptional regulation
ENSG00000251246	Distal transcriptional regulation
EFNA1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)